miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24036 5' -55.7 NC_005262.1 + 34580 0.66 0.743467
Target:  5'- -aGAAG-UCGCGcGcCGCcGCGCGGAUg -3'
miRNA:   3'- caCUUCuAGUGC-CaGCGcCGCGUCUG- -5'
24036 5' -55.7 NC_005262.1 + 43814 0.66 0.733062
Target:  5'- -gGgcGAUCGCGG-CGacaCGGCcGCGGGCc -3'
miRNA:   3'- caCuuCUAGUGCCaGC---GCCG-CGUCUG- -5'
24036 5' -55.7 NC_005262.1 + 46640 0.66 0.733062
Target:  5'- cGUGGGcGUCGCGGgaGCGGCgGCcGGCg -3'
miRNA:   3'- -CACUUcUAGUGCCagCGCCG-CGuCUG- -5'
24036 5' -55.7 NC_005262.1 + 48100 0.66 0.733062
Target:  5'- cGUGGucuGGGUguUGGUCGCGGgGguGcCg -3'
miRNA:   3'- -CACU---UCUAguGCCAGCGCCgCguCuG- -5'
24036 5' -55.7 NC_005262.1 + 38532 0.66 0.722558
Target:  5'- --cAAGAgcuaCACGGUCGCGGUGaCGaucGGCa -3'
miRNA:   3'- cacUUCUa---GUGCCAGCGCCGC-GU---CUG- -5'
24036 5' -55.7 NC_005262.1 + 17733 0.66 0.711965
Target:  5'- -gGAAGuagucggCACGGUgaaGCGG-GCGGACg -3'
miRNA:   3'- caCUUCua-----GUGCCAg--CGCCgCGUCUG- -5'
24036 5' -55.7 NC_005262.1 + 60124 0.66 0.711965
Target:  5'- -cGAGGG-CGCcagcGUCGCGGCGaAGGCa -3'
miRNA:   3'- caCUUCUaGUGc---CAGCGCCGCgUCUG- -5'
24036 5' -55.7 NC_005262.1 + 15121 0.66 0.705571
Target:  5'- cUGAAGGcguggaaugcacgcaUCGCGGcCGgcgucgaguCGGCGCGGAUg -3'
miRNA:   3'- cACUUCU---------------AGUGCCaGC---------GCCGCGUCUG- -5'
24036 5' -55.7 NC_005262.1 + 27097 0.67 0.679767
Target:  5'- ----cGAUCAUGGUCauuccuccaguGCGGCGCGcucGGCg -3'
miRNA:   3'- cacuuCUAGUGCCAG-----------CGCCGCGU---CUG- -5'
24036 5' -55.7 NC_005262.1 + 46992 0.67 0.658061
Target:  5'- -cGAAGG-CAUGGcgCGCGaCGCAGAUg -3'
miRNA:   3'- caCUUCUaGUGCCa-GCGCcGCGUCUG- -5'
24036 5' -55.7 NC_005262.1 + 43152 0.67 0.63626
Target:  5'- aUGAAGcugcCGCGGcgCGCGGUGCcGGCc -3'
miRNA:   3'- cACUUCua--GUGCCa-GCGCCGCGuCUG- -5'
24036 5' -55.7 NC_005262.1 + 16550 0.67 0.63626
Target:  5'- -cGAAGccgcucccguUCACGGcCGCGGaugccgaGCAGGCg -3'
miRNA:   3'- caCUUCu---------AGUGCCaGCGCCg------CGUCUG- -5'
24036 5' -55.7 NC_005262.1 + 28677 0.67 0.632987
Target:  5'- aUGAagcGGAUCACGccguagggcaugccGUCGCGcGCGCGG-Cg -3'
miRNA:   3'- cACU---UCUAGUGC--------------CAGCGC-CGCGUCuG- -5'
24036 5' -55.7 NC_005262.1 + 29760 0.68 0.592689
Target:  5'- -cGcGGGUUggGCGGgcugCGCgGGCGCGGGCg -3'
miRNA:   3'- caCuUCUAG--UGCCa---GCG-CCGCGUCUG- -5'
24036 5' -55.7 NC_005262.1 + 5166 0.68 0.581856
Target:  5'- cUGAucGGUgACGGccggcgUCGCgGGCGCGGGCg -3'
miRNA:   3'- cACUu-CUAgUGCC------AGCG-CCGCGUCUG- -5'
24036 5' -55.7 NC_005262.1 + 37885 0.68 0.581856
Target:  5'- -cGGAGG-CACGGgcgggaaguaUgGUGGCGCGGGCu -3'
miRNA:   3'- caCUUCUaGUGCC----------AgCGCCGCGUCUG- -5'
24036 5' -55.7 NC_005262.1 + 203 0.68 0.581856
Target:  5'- aUGGAGGU--CGGUCGcCGGCcGguGACa -3'
miRNA:   3'- cACUUCUAguGCCAGC-GCCG-CguCUG- -5'
24036 5' -55.7 NC_005262.1 + 50370 0.68 0.571064
Target:  5'- -cGGccGUCACGGgcUCGgcCGGCGCGGGCg -3'
miRNA:   3'- caCUucUAGUGCC--AGC--GCCGCGUCUG- -5'
24036 5' -55.7 NC_005262.1 + 24088 0.69 0.549635
Target:  5'- -cGAucAGcGUCGCGGUCGauGCGgCGGACg -3'
miRNA:   3'- caCU--UC-UAGUGCCAGCgcCGC-GUCUG- -5'
24036 5' -55.7 NC_005262.1 + 25360 0.69 0.549635
Target:  5'- --cAGGAUCA-GGUUGCGGUGCcagAGGCg -3'
miRNA:   3'- cacUUCUAGUgCCAGCGCCGCG---UCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.