miRNA display CGI


Results 21 - 40 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24037 3' -62.3 NC_005262.1 + 26932 0.66 0.417319
Target:  5'- aGGCCagcagaagCUCGACCaUUCcCGUCGCGGCc- -3'
miRNA:   3'- -CCGG--------GAGCUGG-GAGaGCGGUGCCGcc -5'
24037 3' -62.3 NC_005262.1 + 59212 0.66 0.417319
Target:  5'- cGGCCC--GGCCggUUCGCCuCGGCGcGg -3'
miRNA:   3'- -CCGGGagCUGGgaGAGCGGuGCCGC-C- -5'
24037 3' -62.3 NC_005262.1 + 6647 0.67 0.412086
Target:  5'- cGGCgCUUCGAUCgCg-UCGCCguccucgauccacgaGCGGCGGa -3'
miRNA:   3'- -CCG-GGAGCUGG-GagAGCGG---------------UGCCGCC- -5'
24037 3' -62.3 NC_005262.1 + 50370 0.67 0.408621
Target:  5'- cGGCCgucacgggCUCGGCCggcgcgggcgcgCcCUCGUUGCGGCGGu -3'
miRNA:   3'- -CCGG--------GAGCUGG------------GaGAGCGGUGCCGCC- -5'
24037 3' -62.3 NC_005262.1 + 6291 0.67 0.407757
Target:  5'- cGGCCUUCGccGCCUUCUugcgcucgccggcCGCCucucguCGGCGc -3'
miRNA:   3'- -CCGGGAGC--UGGGAGA-------------GCGGu-----GCCGCc -5'
24037 3' -62.3 NC_005262.1 + 14256 0.67 0.400037
Target:  5'- cGGCUUgcCGcACUC-CUCGgCGCGGCGGa -3'
miRNA:   3'- -CCGGGa-GC-UGGGaGAGCgGUGCCGCC- -5'
24037 3' -62.3 NC_005262.1 + 51071 0.67 0.399185
Target:  5'- uGGCCugCUCGACCUUCUCcggcgagaacucgGCCugcguCGGCu- -3'
miRNA:   3'- -CCGG--GAGCUGGGAGAG-------------CGGu----GCCGcc -5'
24037 3' -62.3 NC_005262.1 + 51684 0.67 0.390729
Target:  5'- uGCuUCUCGACCUUCaCGCCcugauggGCGGCGc -3'
miRNA:   3'- cCG-GGAGCUGGGAGaGCGG-------UGCCGCc -5'
24037 3' -62.3 NC_005262.1 + 58119 0.67 0.383219
Target:  5'- cGCUC-CGGCCCUCUC-CCAaGGCa- -3'
miRNA:   3'- cCGGGaGCUGGGAGAGcGGUgCCGcc -5'
24037 3' -62.3 NC_005262.1 + 27636 0.67 0.372543
Target:  5'- cGUCCUCGccggggcugagcucGCCCUCgUCGgUGCGcGCGGg -3'
miRNA:   3'- cCGGGAGC--------------UGGGAG-AGCgGUGC-CGCC- -5'
24037 3' -62.3 NC_005262.1 + 11293 0.67 0.366074
Target:  5'- cGGCUCUCGAUCUUgcagguggCGCgcacgauCACGGCGGc -3'
miRNA:   3'- -CCGGGAGCUGGGAga------GCG-------GUGCCGCC- -5'
24037 3' -62.3 NC_005262.1 + 11082 0.68 0.358889
Target:  5'- cGGCCaaagggCGGCCCgCUgGCaCGCuuGGCGGg -3'
miRNA:   3'- -CCGGga----GCUGGGaGAgCG-GUG--CCGCC- -5'
24037 3' -62.3 NC_005262.1 + 17242 0.68 0.351023
Target:  5'- cGGCCUUgcCGGCCUUCUCGauugcgaCGCGcGCGu -3'
miRNA:   3'- -CCGGGA--GCUGGGAGAGCg------GUGC-CGCc -5'
24037 3' -62.3 NC_005262.1 + 26142 0.68 0.351023
Target:  5'- cGGCUUgaugCGcCCCUgCUugcgCGCCGCGGCGa -3'
miRNA:   3'- -CCGGGa---GCuGGGA-GA----GCGGUGCCGCc -5'
24037 3' -62.3 NC_005262.1 + 33902 0.68 0.351023
Target:  5'- cGGCCggCGGCCCgaUCGguaGCGGCGGu -3'
miRNA:   3'- -CCGGgaGCUGGGagAGCgg-UGCCGCC- -5'
24037 3' -62.3 NC_005262.1 + 22265 0.68 0.350243
Target:  5'- cGGCUuccagcuuCUCGACCUUCgccuccagcUCggcgaugcgggcaGCCGCGGCGGc -3'
miRNA:   3'- -CCGG--------GAGCUGGGAG---------AG-------------CGGUGCCGCC- -5'
24037 3' -62.3 NC_005262.1 + 26022 0.68 0.34328
Target:  5'- gGGCacguaCUaCG-CCCagcagCUCGCCGCGGCGc -3'
miRNA:   3'- -CCGg----GA-GCuGGGa----GAGCGGUGCCGCc -5'
24037 3' -62.3 NC_005262.1 + 9215 0.68 0.33566
Target:  5'- cGGCCCggcgcCGGUCCUCauaGCCGCuGCGGu -3'
miRNA:   3'- -CCGGGa----GCUGGGAGag-CGGUGcCGCC- -5'
24037 3' -62.3 NC_005262.1 + 14553 0.68 0.33566
Target:  5'- cGCUggaUCGGCaggCgUCUCGCCGCGGCGc -3'
miRNA:   3'- cCGGg--AGCUG---GgAGAGCGGUGCCGCc -5'
24037 3' -62.3 NC_005262.1 + 43935 0.68 0.33566
Target:  5'- aGGUCCUgcCGGCCac--CGCCGCGcGCGGc -3'
miRNA:   3'- -CCGGGA--GCUGGgagaGCGGUGC-CGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.