miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24038 3' -57.6 NC_005262.1 + 4390 0.66 0.638242
Target:  5'- aGUCGACGaugagggGCGCGUgauugaggCGGGUGCUUCg- -3'
miRNA:   3'- -UAGCUGCg------CGUGCA--------GCUCGCGAAGga -5'
24038 3' -57.6 NC_005262.1 + 62977 0.66 0.638242
Target:  5'- cGUCGGCGCGCugG-CGGGUGauggugUCg- -3'
miRNA:   3'- -UAGCUGCGCGugCaGCUCGCga----AGga -5'
24038 3' -57.6 NC_005262.1 + 31736 0.66 0.638242
Target:  5'- -cCGGCGguCGCAUGUCGcgcaAGCGCacggUCCa -3'
miRNA:   3'- uaGCUGC--GCGUGCAGC----UCGCGa---AGGa -5'
24038 3' -57.6 NC_005262.1 + 24328 0.66 0.631779
Target:  5'- gGUCGGCGCGaucgacaugcggcucUGCGUCG-GCGCg-CCUg -3'
miRNA:   3'- -UAGCUGCGC---------------GUGCAGCuCGCGaaGGA- -5'
24038 3' -57.6 NC_005262.1 + 31777 0.66 0.62747
Target:  5'- gGUCGAUGCGCACuUCGuccugguagaAGCGaaggcuuuCUUCCUu -3'
miRNA:   3'- -UAGCUGCGCGUGcAGC----------UCGC--------GAAGGA- -5'
24038 3' -57.6 NC_005262.1 + 49228 0.66 0.62747
Target:  5'- cUCGGCgGCGCGCaGUcCGcGCGCgaggUCCg -3'
miRNA:   3'- uAGCUG-CGCGUG-CA-GCuCGCGa---AGGa -5'
24038 3' -57.6 NC_005262.1 + 17061 0.66 0.62747
Target:  5'- cGUCG-CGCGCACGgcgcCGAuagGCGCgcCCg -3'
miRNA:   3'- -UAGCuGCGCGUGCa---GCU---CGCGaaGGa -5'
24038 3' -57.6 NC_005262.1 + 49454 0.66 0.624238
Target:  5'- -aUGaACGCGCGCGUCGccgagucgucagcgAGCGCggcgcgcgCCUg -3'
miRNA:   3'- uaGC-UGCGCGUGCAGC--------------UCGCGaa------GGA- -5'
24038 3' -57.6 NC_005262.1 + 11367 0.66 0.616701
Target:  5'- cGUCGACgaugaaGCGCACGacguUCGcGCGCggcUCCa -3'
miRNA:   3'- -UAGCUG------CGCGUGC----AGCuCGCGa--AGGa -5'
24038 3' -57.6 NC_005262.1 + 57673 0.66 0.616701
Target:  5'- gAUCGACuucuCGCGCGcCGGGCGCggCa- -3'
miRNA:   3'- -UAGCUGc---GCGUGCaGCUCGCGaaGga -5'
24038 3' -57.6 NC_005262.1 + 9027 0.66 0.616701
Target:  5'- cGUCGcC-CGCGCGagggucaaauaaUCGGGCGCUUUCg -3'
miRNA:   3'- -UAGCuGcGCGUGC------------AGCUCGCGAAGGa -5'
24038 3' -57.6 NC_005262.1 + 15714 0.66 0.616701
Target:  5'- -cCGACGCGUucagccGCGccUCGAuGCGCU-CCUg -3'
miRNA:   3'- uaGCUGCGCG------UGC--AGCU-CGCGAaGGA- -5'
24038 3' -57.6 NC_005262.1 + 22307 0.66 0.616701
Target:  5'- -gCGGCGCggccgugaGCuuGUCGAGCGCgagCCc -3'
miRNA:   3'- uaGCUGCG--------CGugCAGCUCGCGaa-GGa -5'
24038 3' -57.6 NC_005262.1 + 33555 0.66 0.616701
Target:  5'- cUCGaACGCGCgcagcgucACGUCGAggagcgaauaGCGCUUgCCg -3'
miRNA:   3'- uAGC-UGCGCG--------UGCAGCU----------CGCGAA-GGa -5'
24038 3' -57.6 NC_005262.1 + 36226 0.66 0.605945
Target:  5'- gGUCGAuCGCGCugG-CG-GUGCUcgCCUc -3'
miRNA:   3'- -UAGCU-GCGCGugCaGCuCGCGAa-GGA- -5'
24038 3' -57.6 NC_005262.1 + 23416 0.66 0.605945
Target:  5'- gGUCGAgCGCGUGC-UCGuGCGCggcgCCUu -3'
miRNA:   3'- -UAGCU-GCGCGUGcAGCuCGCGaa--GGA- -5'
24038 3' -57.6 NC_005262.1 + 7645 0.66 0.605945
Target:  5'- -gUGACGCuGCACGggaaggaugucgUCGAGCGCg-CCg -3'
miRNA:   3'- uaGCUGCG-CGUGC------------AGCUCGCGaaGGa -5'
24038 3' -57.6 NC_005262.1 + 15306 0.66 0.605945
Target:  5'- uUCGcCGCGCAugggcgggcggcCGUCGAGCaacaGCUUCg- -3'
miRNA:   3'- uAGCuGCGCGU------------GCAGCUCG----CGAAGga -5'
24038 3' -57.6 NC_005262.1 + 15626 0.66 0.605945
Target:  5'- cAUCGAgGCGCggcugaacGCGUCGGGCaucccccucGcCUUCCg -3'
miRNA:   3'- -UAGCUgCGCG--------UGCAGCUCG---------C-GAAGGa -5'
24038 3' -57.6 NC_005262.1 + 2205 0.66 0.605945
Target:  5'- uUCGAuCGCGCggcacaucGCGUCGAaGCcGCUcCCUg -3'
miRNA:   3'- uAGCU-GCGCG--------UGCAGCU-CG-CGAaGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.