miRNA display CGI


Results 1 - 20 of 223 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24038 5' -58.6 NC_005262.1 + 28427 0.66 0.627143
Target:  5'- uGAGGC--GCUGCA-CGCGCaCGgGCa -3'
miRNA:   3'- gCUCCGcaUGGCGUaGCGCGcGUgCG- -5'
24038 5' -58.6 NC_005262.1 + 48187 0.66 0.627143
Target:  5'- gCGGcGCGUcACauCAUCGCGCGUcgGCGCc -3'
miRNA:   3'- -GCUcCGCA-UGgcGUAGCGCGCG--UGCG- -5'
24038 5' -58.6 NC_005262.1 + 9438 0.66 0.627143
Target:  5'- gCGGGuGCGaagcCCGCAUUGUGCgGCAC-Ca -3'
miRNA:   3'- -GCUC-CGCau--GGCGUAGCGCG-CGUGcG- -5'
24038 5' -58.6 NC_005262.1 + 11570 0.66 0.627143
Target:  5'- --cGGCGa--CGCGgcccaugugcUCGCGCGCgaGCGCg -3'
miRNA:   3'- gcuCCGCaugGCGU----------AGCGCGCG--UGCG- -5'
24038 5' -58.6 NC_005262.1 + 20487 0.66 0.627143
Target:  5'- gCGAGuGCGUA----AUCGCGCGCAC-Ca -3'
miRNA:   3'- -GCUC-CGCAUggcgUAGCGCGCGUGcG- -5'
24038 5' -58.6 NC_005262.1 + 57659 0.66 0.627143
Target:  5'- uCGAucGGCGgcacgAUCGacuucUCGCGCGCcggGCGCg -3'
miRNA:   3'- -GCU--CCGCa----UGGCgu---AGCGCGCG---UGCG- -5'
24038 5' -58.6 NC_005262.1 + 24569 0.66 0.627143
Target:  5'- uGAucGCGUccgucGCCGUGUCGCG-GUGCGCu -3'
miRNA:   3'- gCUc-CGCA-----UGGCGUAGCGCgCGUGCG- -5'
24038 5' -58.6 NC_005262.1 + 21838 0.66 0.627143
Target:  5'- uGAcGCGUGCCGC--UGCGCGaucuuccgugaGCGCc -3'
miRNA:   3'- gCUcCGCAUGGCGuaGCGCGCg----------UGCG- -5'
24038 5' -58.6 NC_005262.1 + 50361 0.66 0.627143
Target:  5'- -cGGGCucgGCCGg--CGCGgGCGCGCc -3'
miRNA:   3'- gcUCCGca-UGGCguaGCGCgCGUGCG- -5'
24038 5' -58.6 NC_005262.1 + 62822 0.66 0.623974
Target:  5'- --cGGCGcugACCGCca-GCGCGCcgaucagggugcguGCGCg -3'
miRNA:   3'- gcuCCGCa--UGGCGuagCGCGCG--------------UGCG- -5'
24038 5' -58.6 NC_005262.1 + 61 0.66 0.620805
Target:  5'- cCGGGGag-GCCGCGgcUCGCgaagaagucggccgcGcCGCACGCu -3'
miRNA:   3'- -GCUCCgcaUGGCGU--AGCG---------------C-GCGUGCG- -5'
24038 5' -58.6 NC_005262.1 + 46435 0.66 0.616582
Target:  5'- aGGGGCccGCCGCGcCGCcCGCGC-Cg -3'
miRNA:   3'- gCUCCGcaUGGCGUaGCGcGCGUGcG- -5'
24038 5' -58.6 NC_005262.1 + 58680 0.66 0.616582
Target:  5'- cCGAGc----CCGCGUUGCGaGCGCGCa -3'
miRNA:   3'- -GCUCcgcauGGCGUAGCGCgCGUGCG- -5'
24038 5' -58.6 NC_005262.1 + 51549 0.66 0.616582
Target:  5'- cCGGcucGCGUACCaCgugGUCGCGCGCggagcuugaGCGCg -3'
miRNA:   3'- -GCUc--CGCAUGGcG---UAGCGCGCG---------UGCG- -5'
24038 5' -58.6 NC_005262.1 + 61273 0.66 0.616582
Target:  5'- uGAGGuCGUucUCGUAgCGC-CGCGCGCc -3'
miRNA:   3'- gCUCC-GCAu-GGCGUaGCGcGCGUGCG- -5'
24038 5' -58.6 NC_005262.1 + 36980 0.66 0.616582
Target:  5'- aGAGcuugaGCGU-CCGCuUCGUcUGCGCGCa -3'
miRNA:   3'- gCUC-----CGCAuGGCGuAGCGcGCGUGCG- -5'
24038 5' -58.6 NC_005262.1 + 17913 0.66 0.606034
Target:  5'- --cGGCGaGCCGCcgAUCG-GCGCcgACGCc -3'
miRNA:   3'- gcuCCGCaUGGCG--UAGCgCGCG--UGCG- -5'
24038 5' -58.6 NC_005262.1 + 57315 0.66 0.606034
Target:  5'- uGAuuGGCG-GCgCGCGUCGCGaUGC-CGCc -3'
miRNA:   3'- gCU--CCGCaUG-GCGUAGCGC-GCGuGCG- -5'
24038 5' -58.6 NC_005262.1 + 43938 0.66 0.606034
Target:  5'- cCGAGGuCcUGCCGgcCAcCGC-CGCGCGCg -3'
miRNA:   3'- -GCUCC-GcAUGGC--GUaGCGcGCGUGCG- -5'
24038 5' -58.6 NC_005262.1 + 35837 0.66 0.60498
Target:  5'- aGcGGCGUcggcGCCGCGaccgcccagauguUUGUGCGCggcgACGCg -3'
miRNA:   3'- gCuCCGCA----UGGCGU-------------AGCGCGCG----UGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.