miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24039 5' -56.7 NC_005262.1 + 62822 0.66 0.657484
Target:  5'- cGGCGCUGAccGCc-AGCgCGCCGAu -3'
miRNA:   3'- uCUGCGACUucCGcuUCGaGCGGCUu -5'
24039 5' -56.7 NC_005262.1 + 30601 0.66 0.657484
Target:  5'- aAGcCGCUGAAgGGCGcgaagaucGAGCcgcCGCCGAc -3'
miRNA:   3'- -UCuGCGACUU-CCGC--------UUCGa--GCGGCUu -5'
24039 5' -56.7 NC_005262.1 + 47007 0.66 0.65639
Target:  5'- cGACGCaGAuGGGCGAcaucgagGGCgcaGCCGAc -3'
miRNA:   3'- uCUGCGaCU-UCCGCU-------UCGag-CGGCUu -5'
24039 5' -56.7 NC_005262.1 + 17737 0.66 0.655297
Target:  5'- -cGCGCUGGcGGGCGAucucugccugcuGCUCGgCGAGc -3'
miRNA:   3'- ucUGCGACU-UCCGCUu-----------CGAGCgGCUU- -5'
24039 5' -56.7 NC_005262.1 + 62168 0.66 0.646542
Target:  5'- cGACGCauGAGGUcgaGAAGCUaCGCCGu- -3'
miRNA:   3'- uCUGCGacUUCCG---CUUCGA-GCGGCuu -5'
24039 5' -56.7 NC_005262.1 + 47152 0.66 0.646542
Target:  5'- cGACGCgaccGGCGAGGCgcgcaccacuuUCGUCGAc -3'
miRNA:   3'- uCUGCGacuuCCGCUUCG-----------AGCGGCUu -5'
24039 5' -56.7 NC_005262.1 + 40978 0.66 0.646542
Target:  5'- cGGCGUcggguuucUGgcGGCGgcGCUCGCUGc- -3'
miRNA:   3'- uCUGCG--------ACuuCCGCuuCGAGCGGCuu -5'
24039 5' -56.7 NC_005262.1 + 56885 0.66 0.635588
Target:  5'- cGGACGCaGGucgAGcGCGAcaacacGCUCGCCGGc -3'
miRNA:   3'- -UCUGCGaCU---UC-CGCUu-----CGAGCGGCUu -5'
24039 5' -56.7 NC_005262.1 + 30681 0.66 0.635588
Target:  5'- cGGACGCUGGAcGGC---GCUCGaCCGc- -3'
miRNA:   3'- -UCUGCGACUU-CCGcuuCGAGC-GGCuu -5'
24039 5' -56.7 NC_005262.1 + 62514 0.66 0.62463
Target:  5'- gGGGCGUccUGcuGGCGAAaaUCGCCGGc -3'
miRNA:   3'- -UCUGCG--ACuuCCGCUUcgAGCGGCUu -5'
24039 5' -56.7 NC_005262.1 + 43601 0.66 0.613679
Target:  5'- -aACGCaGAuaucgcgcAGGUGAcGCUCGCCGGc -3'
miRNA:   3'- ucUGCGaCU--------UCCGCUuCGAGCGGCUu -5'
24039 5' -56.7 NC_005262.1 + 36117 0.66 0.613679
Target:  5'- cGACGCUGcgcgauacGGCGAGGCgagcacCGCCa-- -3'
miRNA:   3'- uCUGCGACuu------CCGCUUCGa-----GCGGcuu -5'
24039 5' -56.7 NC_005262.1 + 25409 0.66 0.613679
Target:  5'- gAGGCGCUGuuucgggacAAGGUaAAGUUCGCCu-- -3'
miRNA:   3'- -UCUGCGAC---------UUCCGcUUCGAGCGGcuu -5'
24039 5' -56.7 NC_005262.1 + 14685 0.67 0.602744
Target:  5'- uGGAccacuCGCUgucaaucaccgaGAAGGUGAuGCUCGUCGAGa -3'
miRNA:   3'- -UCU-----GCGA------------CUUCCGCUuCGAGCGGCUU- -5'
24039 5' -56.7 NC_005262.1 + 31682 0.67 0.602744
Target:  5'- gAGAgGUcGAAGGUGAuGCgaUCGCCGGc -3'
miRNA:   3'- -UCUgCGaCUUCCGCUuCG--AGCGGCUu -5'
24039 5' -56.7 NC_005262.1 + 57587 0.67 0.591834
Target:  5'- cGACGCUGAAcuucGGCGc--CUCGUCGGc -3'
miRNA:   3'- uCUGCGACUU----CCGCuucGAGCGGCUu -5'
24039 5' -56.7 NC_005262.1 + 5557 0.67 0.591834
Target:  5'- uGAaGCUcucGAAcGGCGAGGUUCGCCGc- -3'
miRNA:   3'- uCUgCGA---CUU-CCGCUUCGAGCGGCuu -5'
24039 5' -56.7 NC_005262.1 + 21872 0.67 0.591834
Target:  5'- cGGCGCUGAAGcCGAccGCgcaGCCGGAc -3'
miRNA:   3'- uCUGCGACUUCcGCUu-CGag-CGGCUU- -5'
24039 5' -56.7 NC_005262.1 + 39143 0.67 0.590745
Target:  5'- cGACGCU---GGCGAcguagcugucagcGGUUCGCUGAAg -3'
miRNA:   3'- uCUGCGAcuuCCGCU-------------UCGAGCGGCUU- -5'
24039 5' -56.7 NC_005262.1 + 48360 0.67 0.559339
Target:  5'- cGGCGCUGcuGGCGGccGGCUaucaGUCGGGu -3'
miRNA:   3'- uCUGCGACuuCCGCU--UCGAg---CGGCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.