Results 1 - 20 of 83 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24040 | 3' | -58.8 | NC_005262.1 | + | 34322 | 1.11 | 0.000361 |
Target: 5'- cACGGUCGCCGCCCUGCACUAUCAGGCg -3' miRNA: 3'- -UGCCAGCGGCGGGACGUGAUAGUCCG- -5' |
|||||||
24040 | 3' | -58.8 | NC_005262.1 | + | 50432 | 0.8 | 0.076689 |
Target: 5'- cGCGGUCGUCGCgggcgcuucguCCUGCGCgg-CGGGCg -3' miRNA: 3'- -UGCCAGCGGCG-----------GGACGUGauaGUCCG- -5' |
|||||||
24040 | 3' | -58.8 | NC_005262.1 | + | 21688 | 0.8 | 0.070527 |
Target: 5'- gGCGG-CGCCGCgCUGCugUAcgCGGGCa -3' miRNA: 3'- -UGCCaGCGGCGgGACGugAUa-GUCCG- -5' |
|||||||
24040 | 3' | -58.8 | NC_005262.1 | + | 49798 | 0.76 | 0.143266 |
Target: 5'- cCGGuUCGCCGCCCgGCACgccgucgcgguUCAGGUu -3' miRNA: 3'- uGCC-AGCGGCGGGaCGUGau---------AGUCCG- -5' |
|||||||
24040 | 3' | -58.8 | NC_005262.1 | + | 51514 | 0.76 | 0.138348 |
Target: 5'- gACGGUaucgcccucgcgcgCGCCGCCgaGCACgcggugcacacgGUCAGGCg -3' miRNA: 3'- -UGCCA--------------GCGGCGGgaCGUGa-----------UAGUCCG- -5' |
|||||||
24040 | 3' | -58.8 | NC_005262.1 | + | 2750 | 0.76 | 0.136497 |
Target: 5'- gGCGGccaggaCGCCGCCCgGCGCcgcgCAGGCa -3' miRNA: 3'- -UGCCa-----GCGGCGGGaCGUGaua-GUCCG- -5' |
|||||||
24040 | 3' | -58.8 | NC_005262.1 | + | 6558 | 0.75 | 0.173502 |
Target: 5'- gGCGuGUUGCCGCCgacgagcgGCGCgAUCAGGCu -3' miRNA: 3'- -UGC-CAGCGGCGGga------CGUGaUAGUCCG- -5' |
|||||||
24040 | 3' | -58.8 | NC_005262.1 | + | 53101 | 0.73 | 0.213649 |
Target: 5'- cUGGUCGCgGCCa--UGCUGUCGGGCa -3' miRNA: 3'- uGCCAGCGgCGGgacGUGAUAGUCCG- -5' |
|||||||
24040 | 3' | -58.8 | NC_005262.1 | + | 42081 | 0.73 | 0.219194 |
Target: 5'- gGCGGgcguUCGUCGCguUCUGCGCggcggUGUCAGGCa -3' miRNA: 3'- -UGCC----AGCGGCG--GGACGUG-----AUAGUCCG- -5' |
|||||||
24040 | 3' | -58.8 | NC_005262.1 | + | 46622 | 0.73 | 0.219194 |
Target: 5'- gGCGGccggCGCCGCgCUGgGCUGcugcgCGGGCa -3' miRNA: 3'- -UGCCa---GCGGCGgGACgUGAUa----GUCCG- -5' |
|||||||
24040 | 3' | -58.8 | NC_005262.1 | + | 58884 | 0.73 | 0.218634 |
Target: 5'- cGCGcGUuggcugcUGCCGCgCUGCGCgAUCAGGCc -3' miRNA: 3'- -UGC-CA-------GCGGCGgGACGUGaUAGUCCG- -5' |
|||||||
24040 | 3' | -58.8 | NC_005262.1 | + | 29868 | 0.72 | 0.261518 |
Target: 5'- -gGGUgccgCGCCGUCCgGCACUAcgcCGGGCg -3' miRNA: 3'- ugCCA----GCGGCGGGaCGUGAUa--GUCCG- -5' |
|||||||
24040 | 3' | -58.8 | NC_005262.1 | + | 5159 | 0.72 | 0.266098 |
Target: 5'- cCGGUCGCaCGCgccgccgccgcgggCCUGCcCgccgAUCAGGCg -3' miRNA: 3'- uGCCAGCG-GCG--------------GGACGuGa---UAGUCCG- -5' |
|||||||
24040 | 3' | -58.8 | NC_005262.1 | + | 25827 | 0.72 | 0.236571 |
Target: 5'- aGCGGcUUGCCGgCCUGCGCgAUCGccucGGCc -3' miRNA: 3'- -UGCC-AGCGGCgGGACGUGaUAGU----CCG- -5' |
|||||||
24040 | 3' | -58.8 | NC_005262.1 | + | 58605 | 0.72 | 0.248786 |
Target: 5'- gAUGGggCGCCucgauGCgCUGCACcGUCAGGCu -3' miRNA: 3'- -UGCCa-GCGG-----CGgGACGUGaUAGUCCG- -5' |
|||||||
24040 | 3' | -58.8 | NC_005262.1 | + | 2722 | 0.72 | 0.248786 |
Target: 5'- uGCGGUagCGCuCGCCCUGCGCc-UCgAGGUc -3' miRNA: 3'- -UGCCA--GCG-GCGGGACGUGauAG-UCCG- -5' |
|||||||
24040 | 3' | -58.8 | NC_005262.1 | + | 56917 | 0.71 | 0.295661 |
Target: 5'- cUGGUCGUCGUggUGCGCguacUCAGGCg -3' miRNA: 3'- uGCCAGCGGCGggACGUGau--AGUCCG- -5' |
|||||||
24040 | 3' | -58.8 | NC_005262.1 | + | 60267 | 0.71 | 0.281603 |
Target: 5'- cCGGUUGCCGCCCacuggccgaGCGCcuUCAcGGCg -3' miRNA: 3'- uGCCAGCGGCGGGa--------CGUGauAGU-CCG- -5' |
|||||||
24040 | 3' | -58.8 | NC_005262.1 | + | 24298 | 0.71 | 0.295661 |
Target: 5'- gACGcUCGCCGCCCUGaUGCUucucgcgaugGUCGGcGCg -3' miRNA: 3'- -UGCcAGCGGCGGGAC-GUGA----------UAGUC-CG- -5' |
|||||||
24040 | 3' | -58.8 | NC_005262.1 | + | 6290 | 0.71 | 0.274775 |
Target: 5'- uCGGccuUCGCCGCCUucuUGCGCUcgCcGGCc -3' miRNA: 3'- uGCC---AGCGGCGGG---ACGUGAuaGuCCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home