miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24040 3' -58.8 NC_005262.1 + 34322 1.11 0.000361
Target:  5'- cACGGUCGCCGCCCUGCACUAUCAGGCg -3'
miRNA:   3'- -UGCCAGCGGCGGGACGUGAUAGUCCG- -5'
24040 3' -58.8 NC_005262.1 + 21688 0.8 0.070527
Target:  5'- gGCGG-CGCCGCgCUGCugUAcgCGGGCa -3'
miRNA:   3'- -UGCCaGCGGCGgGACGugAUa-GUCCG- -5'
24040 3' -58.8 NC_005262.1 + 50432 0.8 0.076689
Target:  5'- cGCGGUCGUCGCgggcgcuucguCCUGCGCgg-CGGGCg -3'
miRNA:   3'- -UGCCAGCGGCG-----------GGACGUGauaGUCCG- -5'
24040 3' -58.8 NC_005262.1 + 2750 0.76 0.136497
Target:  5'- gGCGGccaggaCGCCGCCCgGCGCcgcgCAGGCa -3'
miRNA:   3'- -UGCCa-----GCGGCGGGaCGUGaua-GUCCG- -5'
24040 3' -58.8 NC_005262.1 + 51514 0.76 0.138348
Target:  5'- gACGGUaucgcccucgcgcgCGCCGCCgaGCACgcggugcacacgGUCAGGCg -3'
miRNA:   3'- -UGCCA--------------GCGGCGGgaCGUGa-----------UAGUCCG- -5'
24040 3' -58.8 NC_005262.1 + 49798 0.76 0.143266
Target:  5'- cCGGuUCGCCGCCCgGCACgccgucgcgguUCAGGUu -3'
miRNA:   3'- uGCC-AGCGGCGGGaCGUGau---------AGUCCG- -5'
24040 3' -58.8 NC_005262.1 + 6558 0.75 0.173502
Target:  5'- gGCGuGUUGCCGCCgacgagcgGCGCgAUCAGGCu -3'
miRNA:   3'- -UGC-CAGCGGCGGga------CGUGaUAGUCCG- -5'
24040 3' -58.8 NC_005262.1 + 53101 0.73 0.213649
Target:  5'- cUGGUCGCgGCCa--UGCUGUCGGGCa -3'
miRNA:   3'- uGCCAGCGgCGGgacGUGAUAGUCCG- -5'
24040 3' -58.8 NC_005262.1 + 58884 0.73 0.218634
Target:  5'- cGCGcGUuggcugcUGCCGCgCUGCGCgAUCAGGCc -3'
miRNA:   3'- -UGC-CA-------GCGGCGgGACGUGaUAGUCCG- -5'
24040 3' -58.8 NC_005262.1 + 42081 0.73 0.219194
Target:  5'- gGCGGgcguUCGUCGCguUCUGCGCggcggUGUCAGGCa -3'
miRNA:   3'- -UGCC----AGCGGCG--GGACGUG-----AUAGUCCG- -5'
24040 3' -58.8 NC_005262.1 + 46622 0.73 0.219194
Target:  5'- gGCGGccggCGCCGCgCUGgGCUGcugcgCGGGCa -3'
miRNA:   3'- -UGCCa---GCGGCGgGACgUGAUa----GUCCG- -5'
24040 3' -58.8 NC_005262.1 + 25827 0.72 0.236571
Target:  5'- aGCGGcUUGCCGgCCUGCGCgAUCGccucGGCc -3'
miRNA:   3'- -UGCC-AGCGGCgGGACGUGaUAGU----CCG- -5'
24040 3' -58.8 NC_005262.1 + 58605 0.72 0.248786
Target:  5'- gAUGGggCGCCucgauGCgCUGCACcGUCAGGCu -3'
miRNA:   3'- -UGCCa-GCGG-----CGgGACGUGaUAGUCCG- -5'
24040 3' -58.8 NC_005262.1 + 2722 0.72 0.248786
Target:  5'- uGCGGUagCGCuCGCCCUGCGCc-UCgAGGUc -3'
miRNA:   3'- -UGCCA--GCG-GCGGGACGUGauAG-UCCG- -5'
24040 3' -58.8 NC_005262.1 + 29868 0.72 0.261518
Target:  5'- -gGGUgccgCGCCGUCCgGCACUAcgcCGGGCg -3'
miRNA:   3'- ugCCA----GCGGCGGGaCGUGAUa--GUCCG- -5'
24040 3' -58.8 NC_005262.1 + 5159 0.72 0.266098
Target:  5'- cCGGUCGCaCGCgccgccgccgcgggCCUGCcCgccgAUCAGGCg -3'
miRNA:   3'- uGCCAGCG-GCG--------------GGACGuGa---UAGUCCG- -5'
24040 3' -58.8 NC_005262.1 + 6290 0.71 0.274775
Target:  5'- uCGGccuUCGCCGCCUucuUGCGCUcgCcGGCc -3'
miRNA:   3'- uGCC---AGCGGCGGG---ACGUGAuaGuCCG- -5'
24040 3' -58.8 NC_005262.1 + 47675 0.71 0.274775
Target:  5'- uGCGGUCGCUgaaagccaGCCgCUuCGCUucGUCGGGCg -3'
miRNA:   3'- -UGCCAGCGG--------CGG-GAcGUGA--UAGUCCG- -5'
24040 3' -58.8 NC_005262.1 + 60267 0.71 0.281603
Target:  5'- cCGGUUGCCGCCCacuggccgaGCGCcuUCAcGGCg -3'
miRNA:   3'- uGCCAGCGGCGGGa--------CGUGauAGU-CCG- -5'
24040 3' -58.8 NC_005262.1 + 24298 0.71 0.295661
Target:  5'- gACGcUCGCCGCCCUGaUGCUucucgcgaugGUCGGcGCg -3'
miRNA:   3'- -UGCcAGCGGCGGGAC-GUGA----------UAGUC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.