Results 21 - 40 of 83 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24040 | 3' | -58.8 | NC_005262.1 | + | 56917 | 0.71 | 0.295661 |
Target: 5'- cUGGUCGUCGUggUGCGCguacUCAGGCg -3' miRNA: 3'- uGCCAGCGGCGggACGUGau--AGUCCG- -5' |
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24040 | 3' | -58.8 | NC_005262.1 | + | 30484 | 0.71 | 0.302893 |
Target: 5'- gACGG-CGCCGaaauCCUGC---GUCAGGCg -3' miRNA: 3'- -UGCCaGCGGCg---GGACGugaUAGUCCG- -5' |
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24040 | 3' | -58.8 | NC_005262.1 | + | 5218 | 0.71 | 0.302893 |
Target: 5'- -aGGaucagCGCCGCCCgucGCGCauggCAGGCa -3' miRNA: 3'- ugCCa----GCGGCGGGa--CGUGaua-GUCCG- -5' |
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24040 | 3' | -58.8 | NC_005262.1 | + | 58216 | 0.7 | 0.317762 |
Target: 5'- aGCGG-CGCCGCCCguacCACgaacUUGGGCa -3' miRNA: 3'- -UGCCaGCGGCGGGac--GUGau--AGUCCG- -5' |
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24040 | 3' | -58.8 | NC_005262.1 | + | 2962 | 0.7 | 0.3254 |
Target: 5'- gGCGGgcacucaCGCUGCCCgGCA---UCGGGCa -3' miRNA: 3'- -UGCCa------GCGGCGGGaCGUgauAGUCCG- -5' |
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24040 | 3' | -58.8 | NC_005262.1 | + | 21330 | 0.7 | 0.333173 |
Target: 5'- uCGGaUCGCCGCCUUcGUGCcguUCAGGUc -3' miRNA: 3'- uGCC-AGCGGCGGGA-CGUGau-AGUCCG- -5' |
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24040 | 3' | -58.8 | NC_005262.1 | + | 51615 | 0.7 | 0.349126 |
Target: 5'- cCGGUCGCCGUgUUGCGCacgGUCGucucgccguugcGGCc -3' miRNA: 3'- uGCCAGCGGCGgGACGUGa--UAGU------------CCG- -5' |
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24040 | 3' | -58.8 | NC_005262.1 | + | 41276 | 0.7 | 0.349126 |
Target: 5'- aGCGGUCGCCggGCgC-GCACgcgAUCGcGGCg -3' miRNA: 3'- -UGCCAGCGG--CGgGaCGUGa--UAGU-CCG- -5' |
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24040 | 3' | -58.8 | NC_005262.1 | + | 47799 | 0.7 | 0.357304 |
Target: 5'- gGCGGcgagcCGCCGCCCgGCGCggugCuuGGCg -3' miRNA: 3'- -UGCCa----GCGGCGGGaCGUGaua-Gu-CCG- -5' |
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24040 | 3' | -58.8 | NC_005262.1 | + | 54134 | 0.69 | 0.363943 |
Target: 5'- uGCcGUCGUCGCCCgUGCGCUcgauggugcugUAGGCg -3' miRNA: 3'- -UGcCAGCGGCGGG-ACGUGAua---------GUCCG- -5' |
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24040 | 3' | -58.8 | NC_005262.1 | + | 16972 | 0.69 | 0.37406 |
Target: 5'- uGCGGUguggUGCgGCCCgGCGCgcggcCGGGCg -3' miRNA: 3'- -UGCCA----GCGgCGGGaCGUGaua--GUCCG- -5' |
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24040 | 3' | -58.8 | NC_005262.1 | + | 36527 | 0.69 | 0.39134 |
Target: 5'- gACGGUCGgCGCggcgaCUgGgAUUAUCGGGCg -3' miRNA: 3'- -UGCCAGCgGCGg----GA-CgUGAUAGUCCG- -5' |
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24040 | 3' | -58.8 | NC_005262.1 | + | 56747 | 0.69 | 0.39134 |
Target: 5'- cAUGGcCGCCGCgCUG-GC-GUCGGGCg -3' miRNA: 3'- -UGCCaGCGGCGgGACgUGaUAGUCCG- -5' |
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24040 | 3' | -58.8 | NC_005262.1 | + | 21065 | 0.69 | 0.400173 |
Target: 5'- aAUGGgggCGCCuGCCCaGCAUUucaCAGGCc -3' miRNA: 3'- -UGCCa--GCGG-CGGGaCGUGAua-GUCCG- -5' |
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24040 | 3' | -58.8 | NC_005262.1 | + | 46851 | 0.69 | 0.409132 |
Target: 5'- cGCGcGUCGCCG-CCUGUACgaccggCGuGGCg -3' miRNA: 3'- -UGC-CAGCGGCgGGACGUGaua---GU-CCG- -5' |
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24040 | 3' | -58.8 | NC_005262.1 | + | 45325 | 0.68 | 0.418216 |
Target: 5'- cCGGUCGCCGagUUGCcgGCguUCAGGCc -3' miRNA: 3'- uGCCAGCGGCggGACG--UGauAGUCCG- -5' |
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24040 | 3' | -58.8 | NC_005262.1 | + | 46103 | 0.68 | 0.418216 |
Target: 5'- cGCGGcagCGCgaCGCCUUGCGCgugCAGGa -3' miRNA: 3'- -UGCCa--GCG--GCGGGACGUGauaGUCCg -5' |
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24040 | 3' | -58.8 | NC_005262.1 | + | 47723 | 0.68 | 0.427421 |
Target: 5'- gGCGGcUCGCCGCCUguaucuggUGCGCcg-CcGGCc -3' miRNA: 3'- -UGCC-AGCGGCGGG--------ACGUGauaGuCCG- -5' |
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24040 | 3' | -58.8 | NC_005262.1 | + | 3494 | 0.68 | 0.427421 |
Target: 5'- uGCGGcUCGCCGUCUcgaUGUACcuggaCGGGCa -3' miRNA: 3'- -UGCC-AGCGGCGGG---ACGUGaua--GUCCG- -5' |
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24040 | 3' | -58.8 | NC_005262.1 | + | 636 | 0.68 | 0.446184 |
Target: 5'- aGCGGUCGCgcacgaagUGUCa-GCACUG-CGGGCa -3' miRNA: 3'- -UGCCAGCG--------GCGGgaCGUGAUaGUCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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