Results 1 - 20 of 83 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24040 | 3' | -58.8 | NC_005262.1 | + | 10760 | 0.65 | 0.587088 |
Target: 5'- aACGGUUGuggugauCCGCCC-GCGC---CGGGCg -3' miRNA: 3'- -UGCCAGC-------GGCGGGaCGUGauaGUCCG- -5' |
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24040 | 3' | -58.8 | NC_005262.1 | + | 45174 | 0.66 | 0.581793 |
Target: 5'- uGCGGaCGCgaucaacauggguaaCGgCCUGCcCUcgCAGGCg -3' miRNA: 3'- -UGCCaGCG---------------GCgGGACGuGAuaGUCCG- -5' |
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24040 | 3' | -58.8 | NC_005262.1 | + | 25337 | 0.66 | 0.577565 |
Target: 5'- gGCGG-CGCaggaGCCggcgUUGCGCgcgguUCGGGCg -3' miRNA: 3'- -UGCCaGCGg---CGG----GACGUGau---AGUCCG- -5' |
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24040 | 3' | -58.8 | NC_005262.1 | + | 45290 | 0.66 | 0.577565 |
Target: 5'- gGCGGacaUGCCG-CCUGCGagggCAGGCc -3' miRNA: 3'- -UGCCa--GCGGCgGGACGUgauaGUCCG- -5' |
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24040 | 3' | -58.8 | NC_005262.1 | + | 49935 | 0.66 | 0.577565 |
Target: 5'- cCGGUacCGCCGCCg-GCAC---CGGGCc -3' miRNA: 3'- uGCCA--GCGGCGGgaCGUGauaGUCCG- -5' |
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24040 | 3' | -58.8 | NC_005262.1 | + | 40760 | 0.66 | 0.577565 |
Target: 5'- -gGGUCGUagaCGCUaUGCGCguggGUCGGGUc -3' miRNA: 3'- ugCCAGCG---GCGGgACGUGa---UAGUCCG- -5' |
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24040 | 3' | -58.8 | NC_005262.1 | + | 53663 | 0.66 | 0.577565 |
Target: 5'- gGCGaUCGCCaaccuGCCCgaggGCAuCUAUCagccGGGCg -3' miRNA: 3'- -UGCcAGCGG-----CGGGa---CGU-GAUAG----UCCG- -5' |
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24040 | 3' | -58.8 | NC_005262.1 | + | 50497 | 0.66 | 0.576509 |
Target: 5'- -aGGagGCCGCCaaUGCuggaaccGCUGUCAGuGCa -3' miRNA: 3'- ugCCagCGGCGGg-ACG-------UGAUAGUC-CG- -5' |
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24040 | 3' | -58.8 | NC_005262.1 | + | 9040 | 0.66 | 0.575453 |
Target: 5'- gAUGGguggagugCGUCGCCC-GCGCgagggucaaauaAUCGGGCg -3' miRNA: 3'- -UGCCa-------GCGGCGGGaCGUGa-----------UAGUCCG- -5' |
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24040 | 3' | -58.8 | NC_005262.1 | + | 33289 | 0.66 | 0.567024 |
Target: 5'- gGCGcUCGUCGUCCUGC---GUCGGcGCa -3' miRNA: 3'- -UGCcAGCGGCGGGACGugaUAGUC-CG- -5' |
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24040 | 3' | -58.8 | NC_005262.1 | + | 47359 | 0.66 | 0.567024 |
Target: 5'- cGCGGcguccguuuUCGCCuuGUCCUGCGCcugCuGGCg -3' miRNA: 3'- -UGCC---------AGCGG--CGGGACGUGauaGuCCG- -5' |
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24040 | 3' | -58.8 | NC_005262.1 | + | 61190 | 0.66 | 0.567024 |
Target: 5'- ---uUCGUCGCCCgGUACaucuucagguUAUCGGGCu -3' miRNA: 3'- ugccAGCGGCGGGaCGUG----------AUAGUCCG- -5' |
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24040 | 3' | -58.8 | NC_005262.1 | + | 88 | 0.66 | 0.567024 |
Target: 5'- uCGGccgCGCCGCacgcuUCUGCGCaUGUCAccGGCc -3' miRNA: 3'- uGCCa--GCGGCG-----GGACGUG-AUAGU--CCG- -5' |
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24040 | 3' | -58.8 | NC_005262.1 | + | 57605 | 0.66 | 0.564921 |
Target: 5'- cGCGGUCGauGCCCgGCGCgacgcugaacuUCGGcGCc -3' miRNA: 3'- -UGCCAGCggCGGGaCGUGau---------AGUC-CG- -5' |
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24040 | 3' | -58.8 | NC_005262.1 | + | 42162 | 0.66 | 0.556533 |
Target: 5'- cCGGUCGCgGCCgaucguCUGUACgugauGGGCg -3' miRNA: 3'- uGCCAGCGgCGG------GACGUGauag-UCCG- -5' |
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24040 | 3' | -58.8 | NC_005262.1 | + | 58114 | 0.66 | 0.556533 |
Target: 5'- gACGGUC-CUGCCCuugcUGCGCUGUacucgcccugCuGGCc -3' miRNA: 3'- -UGCCAGcGGCGGG----ACGUGAUA----------GuCCG- -5' |
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24040 | 3' | -58.8 | NC_005262.1 | + | 38825 | 0.66 | 0.556533 |
Target: 5'- aGCGGgaaccaGUCGCCa-GCGCUgagcGUCGGGUa -3' miRNA: 3'- -UGCCag----CGGCGGgaCGUGA----UAGUCCG- -5' |
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24040 | 3' | -58.8 | NC_005262.1 | + | 5029 | 0.66 | 0.555486 |
Target: 5'- aGCGGcaguugcUCGCCGgCCgGCGCcugaucggCGGGCa -3' miRNA: 3'- -UGCC-------AGCGGCgGGaCGUGaua-----GUCCG- -5' |
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24040 | 3' | -58.8 | NC_005262.1 | + | 4561 | 0.66 | 0.546098 |
Target: 5'- cGCGG-CGCaucucgCGCCagcggcgGCGCUGcUCGGGCg -3' miRNA: 3'- -UGCCaGCG------GCGGga-----CGUGAU-AGUCCG- -5' |
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24040 | 3' | -58.8 | NC_005262.1 | + | 2774 | 0.66 | 0.546098 |
Target: 5'- gGCGGgUGCCGCauCCUugucgucgaucaGCAUguccGUCAGGCg -3' miRNA: 3'- -UGCCaGCGGCG--GGA------------CGUGa---UAGUCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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