miRNA display CGI


Results 21 - 40 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24040 3' -58.8 NC_005262.1 + 4561 0.66 0.546098
Target:  5'- cGCGG-CGCaucucgCGCCagcggcgGCGCUGcUCGGGCg -3'
miRNA:   3'- -UGCCaGCG------GCGGga-----CGUGAU-AGUCCG- -5'
24040 3' -58.8 NC_005262.1 + 23673 0.66 0.546098
Target:  5'- gUGGaUGCCGCCCgagcgGCGCguguggGUCuaccGGCg -3'
miRNA:   3'- uGCCaGCGGCGGGa----CGUGa-----UAGu---CCG- -5'
24040 3' -58.8 NC_005262.1 + 61997 0.66 0.544019
Target:  5'- cCGG-CGCaGCCCUGCgGCguaucgucagCAGGCa -3'
miRNA:   3'- uGCCaGCGgCGGGACG-UGaua-------GUCCG- -5'
24040 3' -58.8 NC_005262.1 + 20671 0.66 0.535727
Target:  5'- uGCGGcgCGCCGCgCgCUGCuCgc-CGGGCu -3'
miRNA:   3'- -UGCCa-GCGGCG-G-GACGuGauaGUCCG- -5'
24040 3' -58.8 NC_005262.1 + 26556 0.66 0.535727
Target:  5'- aGCGGcCGaCGCgCUGCGCcaguucgcgCAGGCa -3'
miRNA:   3'- -UGCCaGCgGCGgGACGUGaua------GUCCG- -5'
24040 3' -58.8 NC_005262.1 + 58290 0.67 0.525425
Target:  5'- gGCGG-CGCCGCUCU-C-Cg--CAGGCg -3'
miRNA:   3'- -UGCCaGCGGCGGGAcGuGauaGUCCG- -5'
24040 3' -58.8 NC_005262.1 + 11655 0.67 0.525425
Target:  5'- cCGG-CGUCGCgCUGCACg--CuGGCc -3'
miRNA:   3'- uGCCaGCGGCGgGACGUGauaGuCCG- -5'
24040 3' -58.8 NC_005262.1 + 49780 0.67 0.5244
Target:  5'- cCGGcCGCUGCcgcgccggacgccCCUGCACcGUCcGGCc -3'
miRNA:   3'- uGCCaGCGGCG-------------GGACGUGaUAGuCCG- -5'
24040 3' -58.8 NC_005262.1 + 17834 0.67 0.505056
Target:  5'- aGCGuGUCGuCCGCCCgcuucaccgUGCcgACUAcuuccggcUCGGGCu -3'
miRNA:   3'- -UGC-CAGC-GGCGGG---------ACG--UGAU--------AGUCCG- -5'
24040 3' -58.8 NC_005262.1 + 25270 0.67 0.505056
Target:  5'- cUGGUCGUCGCCCUuGaugaugaucUugUA-CAGGCg -3'
miRNA:   3'- uGCCAGCGGCGGGA-C---------GugAUaGUCCG- -5'
24040 3' -58.8 NC_005262.1 + 14408 0.67 0.505056
Target:  5'- gGCGGUgCGUCGCCUcaUGC-CUGUCGaGUg -3'
miRNA:   3'- -UGCCA-GCGGCGGG--ACGuGAUAGUcCG- -5'
24040 3' -58.8 NC_005262.1 + 14534 0.67 0.494999
Target:  5'- cAUGGcagUGCCGUgCaUGCGCUGgaucggCAGGCg -3'
miRNA:   3'- -UGCCa--GCGGCGgG-ACGUGAUa-----GUCCG- -5'
24040 3' -58.8 NC_005262.1 + 54916 0.67 0.494999
Target:  5'- gACGGcUCGCa--CCUGaCGCUGcCGGGCg -3'
miRNA:   3'- -UGCC-AGCGgcgGGAC-GUGAUaGUCCG- -5'
24040 3' -58.8 NC_005262.1 + 11164 0.67 0.494999
Target:  5'- aGCGG--GCCGCCCUuugGCcGCUcgggcUCAGGCg -3'
miRNA:   3'- -UGCCagCGGCGGGA---CG-UGAu----AGUCCG- -5'
24040 3' -58.8 NC_005262.1 + 22231 0.67 0.493998
Target:  5'- cACGGccgCGCCGCCCacgccggccggccUGCGC-AUCAcGCc -3'
miRNA:   3'- -UGCCa--GCGGCGGG-------------ACGUGaUAGUcCG- -5'
24040 3' -58.8 NC_005262.1 + 51019 0.67 0.485034
Target:  5'- gGCGGccggcaccaucuUCGUuucgugcucgaUGCCCUGCGCguUCAGGUg -3'
miRNA:   3'- -UGCC------------AGCG-----------GCGGGACGUGauAGUCCG- -5'
24040 3' -58.8 NC_005262.1 + 61948 0.67 0.485034
Target:  5'- --cGUCGgCGCCUUgGCGCUggggauuuucAUCGGGCa -3'
miRNA:   3'- ugcCAGCgGCGGGA-CGUGA----------UAGUCCG- -5'
24040 3' -58.8 NC_005262.1 + 40823 0.67 0.475166
Target:  5'- aACGcGcCGCCGCCC-GUGCUcgaGGGCg -3'
miRNA:   3'- -UGC-CaGCGGCGGGaCGUGAuagUCCG- -5'
24040 3' -58.8 NC_005262.1 + 1112 0.67 0.475166
Target:  5'- cCGGUucCGCCGCCUcuUGCucugcggccGCUG-CGGGCu -3'
miRNA:   3'- uGCCA--GCGGCGGG--ACG---------UGAUaGUCCG- -5'
24040 3' -58.8 NC_005262.1 + 41527 0.67 0.475166
Target:  5'- aACGGUagccgCGCCGCCCgUGUua-GUCGGcGCa -3'
miRNA:   3'- -UGCCA-----GCGGCGGG-ACGugaUAGUC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.