miRNA display CGI


Results 41 - 60 of 83 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24040 3' -58.8 NC_005262.1 + 53400 0.68 0.465399
Target:  5'- cGCGGUCGCuCGCCUUGUcC-AUCGuGCc -3'
miRNA:   3'- -UGCCAGCG-GCGGGACGuGaUAGUcCG- -5'
24040 3' -58.8 NC_005262.1 + 59186 0.68 0.455737
Target:  5'- cACGGgccCGCugauggagCGCCUUGCGaaGUCGGGCc -3'
miRNA:   3'- -UGCCa--GCG--------GCGGGACGUgaUAGUCCG- -5'
24040 3' -58.8 NC_005262.1 + 636 0.68 0.446184
Target:  5'- aGCGGUCGCgcacgaagUGUCa-GCACUG-CGGGCa -3'
miRNA:   3'- -UGCCAGCG--------GCGGgaCGUGAUaGUCCG- -5'
24040 3' -58.8 NC_005262.1 + 15395 0.68 0.446184
Target:  5'- gACGGcCGcCCGCCCaUGCGCggcgaAUCGacgacuGGCa -3'
miRNA:   3'- -UGCCaGC-GGCGGG-ACGUGa----UAGU------CCG- -5'
24040 3' -58.8 NC_005262.1 + 3494 0.68 0.427421
Target:  5'- uGCGGcUCGCCGUCUcgaUGUACcuggaCGGGCa -3'
miRNA:   3'- -UGCC-AGCGGCGGG---ACGUGaua--GUCCG- -5'
24040 3' -58.8 NC_005262.1 + 47723 0.68 0.427421
Target:  5'- gGCGGcUCGCCGCCUguaucuggUGCGCcg-CcGGCc -3'
miRNA:   3'- -UGCC-AGCGGCGGG--------ACGUGauaGuCCG- -5'
24040 3' -58.8 NC_005262.1 + 46103 0.68 0.418216
Target:  5'- cGCGGcagCGCgaCGCCUUGCGCgugCAGGa -3'
miRNA:   3'- -UGCCa--GCG--GCGGGACGUGauaGUCCg -5'
24040 3' -58.8 NC_005262.1 + 45325 0.68 0.418216
Target:  5'- cCGGUCGCCGagUUGCcgGCguUCAGGCc -3'
miRNA:   3'- uGCCAGCGGCggGACG--UGauAGUCCG- -5'
24040 3' -58.8 NC_005262.1 + 46851 0.69 0.409132
Target:  5'- cGCGcGUCGCCG-CCUGUACgaccggCGuGGCg -3'
miRNA:   3'- -UGC-CAGCGGCgGGACGUGaua---GU-CCG- -5'
24040 3' -58.8 NC_005262.1 + 21065 0.69 0.400173
Target:  5'- aAUGGgggCGCCuGCCCaGCAUUucaCAGGCc -3'
miRNA:   3'- -UGCCa--GCGG-CGGGaCGUGAua-GUCCG- -5'
24040 3' -58.8 NC_005262.1 + 56747 0.69 0.39134
Target:  5'- cAUGGcCGCCGCgCUG-GC-GUCGGGCg -3'
miRNA:   3'- -UGCCaGCGGCGgGACgUGaUAGUCCG- -5'
24040 3' -58.8 NC_005262.1 + 36527 0.69 0.39134
Target:  5'- gACGGUCGgCGCggcgaCUgGgAUUAUCGGGCg -3'
miRNA:   3'- -UGCCAGCgGCGg----GA-CgUGAUAGUCCG- -5'
24040 3' -58.8 NC_005262.1 + 16972 0.69 0.37406
Target:  5'- uGCGGUguggUGCgGCCCgGCGCgcggcCGGGCg -3'
miRNA:   3'- -UGCCA----GCGgCGGGaCGUGaua--GUCCG- -5'
24040 3' -58.8 NC_005262.1 + 54134 0.69 0.363943
Target:  5'- uGCcGUCGUCGCCCgUGCGCUcgauggugcugUAGGCg -3'
miRNA:   3'- -UGcCAGCGGCGGG-ACGUGAua---------GUCCG- -5'
24040 3' -58.8 NC_005262.1 + 47799 0.7 0.357304
Target:  5'- gGCGGcgagcCGCCGCCCgGCGCggugCuuGGCg -3'
miRNA:   3'- -UGCCa----GCGGCGGGaCGUGaua-Gu-CCG- -5'
24040 3' -58.8 NC_005262.1 + 41276 0.7 0.349126
Target:  5'- aGCGGUCGCCggGCgC-GCACgcgAUCGcGGCg -3'
miRNA:   3'- -UGCCAGCGG--CGgGaCGUGa--UAGU-CCG- -5'
24040 3' -58.8 NC_005262.1 + 51615 0.7 0.349126
Target:  5'- cCGGUCGCCGUgUUGCGCacgGUCGucucgccguugcGGCc -3'
miRNA:   3'- uGCCAGCGGCGgGACGUGa--UAGU------------CCG- -5'
24040 3' -58.8 NC_005262.1 + 21330 0.7 0.333173
Target:  5'- uCGGaUCGCCGCCUUcGUGCcguUCAGGUc -3'
miRNA:   3'- uGCC-AGCGGCGGGA-CGUGau-AGUCCG- -5'
24040 3' -58.8 NC_005262.1 + 2962 0.7 0.3254
Target:  5'- gGCGGgcacucaCGCUGCCCgGCA---UCGGGCa -3'
miRNA:   3'- -UGCCa------GCGGCGGGaCGUgauAGUCCG- -5'
24040 3' -58.8 NC_005262.1 + 58216 0.7 0.317762
Target:  5'- aGCGG-CGCCGCCCguacCACgaacUUGGGCa -3'
miRNA:   3'- -UGCCaGCGGCGGGac--GUGau--AGUCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.