miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24040 3' -58.8 NC_005262.1 + 88 0.66 0.567024
Target:  5'- uCGGccgCGCCGCacgcuUCUGCGCaUGUCAccGGCc -3'
miRNA:   3'- uGCCa--GCGGCG-----GGACGUG-AUAGU--CCG- -5'
24040 3' -58.8 NC_005262.1 + 636 0.68 0.446184
Target:  5'- aGCGGUCGCgcacgaagUGUCa-GCACUG-CGGGCa -3'
miRNA:   3'- -UGCCAGCG--------GCGGgaCGUGAUaGUCCG- -5'
24040 3' -58.8 NC_005262.1 + 1112 0.67 0.475166
Target:  5'- cCGGUucCGCCGCCUcuUGCucugcggccGCUG-CGGGCu -3'
miRNA:   3'- uGCCA--GCGGCGGG--ACG---------UGAUaGUCCG- -5'
24040 3' -58.8 NC_005262.1 + 2722 0.72 0.248786
Target:  5'- uGCGGUagCGCuCGCCCUGCGCc-UCgAGGUc -3'
miRNA:   3'- -UGCCA--GCG-GCGGGACGUGauAG-UCCG- -5'
24040 3' -58.8 NC_005262.1 + 2750 0.76 0.136497
Target:  5'- gGCGGccaggaCGCCGCCCgGCGCcgcgCAGGCa -3'
miRNA:   3'- -UGCCa-----GCGGCGGGaCGUGaua-GUCCG- -5'
24040 3' -58.8 NC_005262.1 + 2774 0.66 0.546098
Target:  5'- gGCGGgUGCCGCauCCUugucgucgaucaGCAUguccGUCAGGCg -3'
miRNA:   3'- -UGCCaGCGGCG--GGA------------CGUGa---UAGUCCG- -5'
24040 3' -58.8 NC_005262.1 + 2962 0.7 0.3254
Target:  5'- gGCGGgcacucaCGCUGCCCgGCA---UCGGGCa -3'
miRNA:   3'- -UGCCa------GCGGCGGGaCGUgauAGUCCG- -5'
24040 3' -58.8 NC_005262.1 + 3494 0.68 0.427421
Target:  5'- uGCGGcUCGCCGUCUcgaUGUACcuggaCGGGCa -3'
miRNA:   3'- -UGCC-AGCGGCGGG---ACGUGaua--GUCCG- -5'
24040 3' -58.8 NC_005262.1 + 4561 0.66 0.546098
Target:  5'- cGCGG-CGCaucucgCGCCagcggcgGCGCUGcUCGGGCg -3'
miRNA:   3'- -UGCCaGCG------GCGGga-----CGUGAU-AGUCCG- -5'
24040 3' -58.8 NC_005262.1 + 5029 0.66 0.555486
Target:  5'- aGCGGcaguugcUCGCCGgCCgGCGCcugaucggCGGGCa -3'
miRNA:   3'- -UGCC-------AGCGGCgGGaCGUGaua-----GUCCG- -5'
24040 3' -58.8 NC_005262.1 + 5159 0.72 0.266098
Target:  5'- cCGGUCGCaCGCgccgccgccgcgggCCUGCcCgccgAUCAGGCg -3'
miRNA:   3'- uGCCAGCG-GCG--------------GGACGuGa---UAGUCCG- -5'
24040 3' -58.8 NC_005262.1 + 5218 0.71 0.302893
Target:  5'- -aGGaucagCGCCGCCCgucGCGCauggCAGGCa -3'
miRNA:   3'- ugCCa----GCGGCGGGa--CGUGaua-GUCCG- -5'
24040 3' -58.8 NC_005262.1 + 6290 0.71 0.274775
Target:  5'- uCGGccuUCGCCGCCUucuUGCGCUcgCcGGCc -3'
miRNA:   3'- uGCC---AGCGGCGGG---ACGUGAuaGuCCG- -5'
24040 3' -58.8 NC_005262.1 + 6558 0.75 0.173502
Target:  5'- gGCGuGUUGCCGCCgacgagcgGCGCgAUCAGGCu -3'
miRNA:   3'- -UGC-CAGCGGCGGga------CGUGaUAGUCCG- -5'
24040 3' -58.8 NC_005262.1 + 9040 0.66 0.575453
Target:  5'- gAUGGguggagugCGUCGCCC-GCGCgagggucaaauaAUCGGGCg -3'
miRNA:   3'- -UGCCa-------GCGGCGGGaCGUGa-----------UAGUCCG- -5'
24040 3' -58.8 NC_005262.1 + 10760 0.65 0.587088
Target:  5'- aACGGUUGuggugauCCGCCC-GCGC---CGGGCg -3'
miRNA:   3'- -UGCCAGC-------GGCGGGaCGUGauaGUCCG- -5'
24040 3' -58.8 NC_005262.1 + 11164 0.67 0.494999
Target:  5'- aGCGG--GCCGCCCUuugGCcGCUcgggcUCAGGCg -3'
miRNA:   3'- -UGCCagCGGCGGGA---CG-UGAu----AGUCCG- -5'
24040 3' -58.8 NC_005262.1 + 11655 0.67 0.525425
Target:  5'- cCGG-CGUCGCgCUGCACg--CuGGCc -3'
miRNA:   3'- uGCCaGCGGCGgGACGUGauaGuCCG- -5'
24040 3' -58.8 NC_005262.1 + 14408 0.67 0.505056
Target:  5'- gGCGGUgCGUCGCCUcaUGC-CUGUCGaGUg -3'
miRNA:   3'- -UGCCA-GCGGCGGG--ACGuGAUAGUcCG- -5'
24040 3' -58.8 NC_005262.1 + 14534 0.67 0.494999
Target:  5'- cAUGGcagUGCCGUgCaUGCGCUGgaucggCAGGCg -3'
miRNA:   3'- -UGCCa--GCGGCGgG-ACGUGAUa-----GUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.