miRNA display CGI


Results 21 - 40 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24040 3' -58.8 NC_005262.1 + 15395 0.68 0.446184
Target:  5'- gACGGcCGcCCGCCCaUGCGCggcgaAUCGacgacuGGCa -3'
miRNA:   3'- -UGCCaGC-GGCGGG-ACGUGa----UAGU------CCG- -5'
24040 3' -58.8 NC_005262.1 + 16972 0.69 0.37406
Target:  5'- uGCGGUguggUGCgGCCCgGCGCgcggcCGGGCg -3'
miRNA:   3'- -UGCCA----GCGgCGGGaCGUGaua--GUCCG- -5'
24040 3' -58.8 NC_005262.1 + 17834 0.67 0.505056
Target:  5'- aGCGuGUCGuCCGCCCgcuucaccgUGCcgACUAcuuccggcUCGGGCu -3'
miRNA:   3'- -UGC-CAGC-GGCGGG---------ACG--UGAU--------AGUCCG- -5'
24040 3' -58.8 NC_005262.1 + 20671 0.66 0.535727
Target:  5'- uGCGGcgCGCCGCgCgCUGCuCgc-CGGGCu -3'
miRNA:   3'- -UGCCa-GCGGCG-G-GACGuGauaGUCCG- -5'
24040 3' -58.8 NC_005262.1 + 21065 0.69 0.400173
Target:  5'- aAUGGgggCGCCuGCCCaGCAUUucaCAGGCc -3'
miRNA:   3'- -UGCCa--GCGG-CGGGaCGUGAua-GUCCG- -5'
24040 3' -58.8 NC_005262.1 + 21330 0.7 0.333173
Target:  5'- uCGGaUCGCCGCCUUcGUGCcguUCAGGUc -3'
miRNA:   3'- uGCC-AGCGGCGGGA-CGUGau-AGUCCG- -5'
24040 3' -58.8 NC_005262.1 + 21688 0.8 0.070527
Target:  5'- gGCGG-CGCCGCgCUGCugUAcgCGGGCa -3'
miRNA:   3'- -UGCCaGCGGCGgGACGugAUa-GUCCG- -5'
24040 3' -58.8 NC_005262.1 + 22231 0.67 0.493998
Target:  5'- cACGGccgCGCCGCCCacgccggccggccUGCGC-AUCAcGCc -3'
miRNA:   3'- -UGCCa--GCGGCGGG-------------ACGUGaUAGUcCG- -5'
24040 3' -58.8 NC_005262.1 + 23673 0.66 0.546098
Target:  5'- gUGGaUGCCGCCCgagcgGCGCguguggGUCuaccGGCg -3'
miRNA:   3'- uGCCaGCGGCGGGa----CGUGa-----UAGu---CCG- -5'
24040 3' -58.8 NC_005262.1 + 24298 0.71 0.295661
Target:  5'- gACGcUCGCCGCCCUGaUGCUucucgcgaugGUCGGcGCg -3'
miRNA:   3'- -UGCcAGCGGCGGGAC-GUGA----------UAGUC-CG- -5'
24040 3' -58.8 NC_005262.1 + 25270 0.67 0.505056
Target:  5'- cUGGUCGUCGCCCUuGaugaugaucUugUA-CAGGCg -3'
miRNA:   3'- uGCCAGCGGCGGGA-C---------GugAUaGUCCG- -5'
24040 3' -58.8 NC_005262.1 + 25337 0.66 0.577565
Target:  5'- gGCGG-CGCaggaGCCggcgUUGCGCgcgguUCGGGCg -3'
miRNA:   3'- -UGCCaGCGg---CGG----GACGUGau---AGUCCG- -5'
24040 3' -58.8 NC_005262.1 + 25827 0.72 0.236571
Target:  5'- aGCGGcUUGCCGgCCUGCGCgAUCGccucGGCc -3'
miRNA:   3'- -UGCC-AGCGGCgGGACGUGaUAGU----CCG- -5'
24040 3' -58.8 NC_005262.1 + 26556 0.66 0.535727
Target:  5'- aGCGGcCGaCGCgCUGCGCcaguucgcgCAGGCa -3'
miRNA:   3'- -UGCCaGCgGCGgGACGUGaua------GUCCG- -5'
24040 3' -58.8 NC_005262.1 + 29868 0.72 0.261518
Target:  5'- -gGGUgccgCGCCGUCCgGCACUAcgcCGGGCg -3'
miRNA:   3'- ugCCA----GCGGCGGGaCGUGAUa--GUCCG- -5'
24040 3' -58.8 NC_005262.1 + 30484 0.71 0.302893
Target:  5'- gACGG-CGCCGaaauCCUGC---GUCAGGCg -3'
miRNA:   3'- -UGCCaGCGGCg---GGACGugaUAGUCCG- -5'
24040 3' -58.8 NC_005262.1 + 33289 0.66 0.567024
Target:  5'- gGCGcUCGUCGUCCUGC---GUCGGcGCa -3'
miRNA:   3'- -UGCcAGCGGCGGGACGugaUAGUC-CG- -5'
24040 3' -58.8 NC_005262.1 + 34322 1.11 0.000361
Target:  5'- cACGGUCGCCGCCCUGCACUAUCAGGCg -3'
miRNA:   3'- -UGCCAGCGGCGGGACGUGAUAGUCCG- -5'
24040 3' -58.8 NC_005262.1 + 36527 0.69 0.39134
Target:  5'- gACGGUCGgCGCggcgaCUgGgAUUAUCGGGCg -3'
miRNA:   3'- -UGCCAGCgGCGg----GA-CgUGAUAGUCCG- -5'
24040 3' -58.8 NC_005262.1 + 38825 0.66 0.556533
Target:  5'- aGCGGgaaccaGUCGCCa-GCGCUgagcGUCGGGUa -3'
miRNA:   3'- -UGCCag----CGGCGGgaCGUGA----UAGUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.