miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24040 3' -58.8 NC_005262.1 + 61997 0.66 0.544019
Target:  5'- cCGG-CGCaGCCCUGCgGCguaucgucagCAGGCa -3'
miRNA:   3'- uGCCaGCGgCGGGACG-UGaua-------GUCCG- -5'
24040 3' -58.8 NC_005262.1 + 61948 0.67 0.485034
Target:  5'- --cGUCGgCGCCUUgGCGCUggggauuuucAUCGGGCa -3'
miRNA:   3'- ugcCAGCgGCGGGA-CGUGA----------UAGUCCG- -5'
24040 3' -58.8 NC_005262.1 + 61190 0.66 0.567024
Target:  5'- ---uUCGUCGCCCgGUACaucuucagguUAUCGGGCu -3'
miRNA:   3'- ugccAGCGGCGGGaCGUG----------AUAGUCCG- -5'
24040 3' -58.8 NC_005262.1 + 60267 0.71 0.281603
Target:  5'- cCGGUUGCCGCCCacuggccgaGCGCcuUCAcGGCg -3'
miRNA:   3'- uGCCAGCGGCGGGa--------CGUGauAGU-CCG- -5'
24040 3' -58.8 NC_005262.1 + 59186 0.68 0.455737
Target:  5'- cACGGgccCGCugauggagCGCCUUGCGaaGUCGGGCc -3'
miRNA:   3'- -UGCCa--GCG--------GCGGGACGUgaUAGUCCG- -5'
24040 3' -58.8 NC_005262.1 + 58884 0.73 0.218634
Target:  5'- cGCGcGUuggcugcUGCCGCgCUGCGCgAUCAGGCc -3'
miRNA:   3'- -UGC-CA-------GCGGCGgGACGUGaUAGUCCG- -5'
24040 3' -58.8 NC_005262.1 + 58605 0.72 0.248786
Target:  5'- gAUGGggCGCCucgauGCgCUGCACcGUCAGGCu -3'
miRNA:   3'- -UGCCa-GCGG-----CGgGACGUGaUAGUCCG- -5'
24040 3' -58.8 NC_005262.1 + 58290 0.67 0.525425
Target:  5'- gGCGG-CGCCGCUCU-C-Cg--CAGGCg -3'
miRNA:   3'- -UGCCaGCGGCGGGAcGuGauaGUCCG- -5'
24040 3' -58.8 NC_005262.1 + 58216 0.7 0.317762
Target:  5'- aGCGG-CGCCGCCCguacCACgaacUUGGGCa -3'
miRNA:   3'- -UGCCaGCGGCGGGac--GUGau--AGUCCG- -5'
24040 3' -58.8 NC_005262.1 + 58114 0.66 0.556533
Target:  5'- gACGGUC-CUGCCCuugcUGCGCUGUacucgcccugCuGGCc -3'
miRNA:   3'- -UGCCAGcGGCGGG----ACGUGAUA----------GuCCG- -5'
24040 3' -58.8 NC_005262.1 + 57605 0.66 0.564921
Target:  5'- cGCGGUCGauGCCCgGCGCgacgcugaacuUCGGcGCc -3'
miRNA:   3'- -UGCCAGCggCGGGaCGUGau---------AGUC-CG- -5'
24040 3' -58.8 NC_005262.1 + 56917 0.71 0.295661
Target:  5'- cUGGUCGUCGUggUGCGCguacUCAGGCg -3'
miRNA:   3'- uGCCAGCGGCGggACGUGau--AGUCCG- -5'
24040 3' -58.8 NC_005262.1 + 56747 0.69 0.39134
Target:  5'- cAUGGcCGCCGCgCUG-GC-GUCGGGCg -3'
miRNA:   3'- -UGCCaGCGGCGgGACgUGaUAGUCCG- -5'
24040 3' -58.8 NC_005262.1 + 54916 0.67 0.494999
Target:  5'- gACGGcUCGCa--CCUGaCGCUGcCGGGCg -3'
miRNA:   3'- -UGCC-AGCGgcgGGAC-GUGAUaGUCCG- -5'
24040 3' -58.8 NC_005262.1 + 54134 0.69 0.363943
Target:  5'- uGCcGUCGUCGCCCgUGCGCUcgauggugcugUAGGCg -3'
miRNA:   3'- -UGcCAGCGGCGGG-ACGUGAua---------GUCCG- -5'
24040 3' -58.8 NC_005262.1 + 53663 0.66 0.577565
Target:  5'- gGCGaUCGCCaaccuGCCCgaggGCAuCUAUCagccGGGCg -3'
miRNA:   3'- -UGCcAGCGG-----CGGGa---CGU-GAUAG----UCCG- -5'
24040 3' -58.8 NC_005262.1 + 53400 0.68 0.465399
Target:  5'- cGCGGUCGCuCGCCUUGUcC-AUCGuGCc -3'
miRNA:   3'- -UGCCAGCG-GCGGGACGuGaUAGUcCG- -5'
24040 3' -58.8 NC_005262.1 + 53101 0.73 0.213649
Target:  5'- cUGGUCGCgGCCa--UGCUGUCGGGCa -3'
miRNA:   3'- uGCCAGCGgCGGgacGUGAUAGUCCG- -5'
24040 3' -58.8 NC_005262.1 + 52716 0.66 0.546098
Target:  5'- uGCGGUCGCgCGCCacgagccggUGCGCU-UCAgcucgcccGGCu -3'
miRNA:   3'- -UGCCAGCG-GCGGg--------ACGUGAuAGU--------CCG- -5'
24040 3' -58.8 NC_005262.1 + 51615 0.7 0.349126
Target:  5'- cCGGUCGCCGUgUUGCGCacgGUCGucucgccguugcGGCc -3'
miRNA:   3'- uGCCAGCGGCGgGACGUGa--UAGU------------CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.