miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24040 3' -58.8 NC_005262.1 + 14408 0.67 0.505056
Target:  5'- gGCGGUgCGUCGCCUcaUGC-CUGUCGaGUg -3'
miRNA:   3'- -UGCCA-GCGGCGGG--ACGuGAUAGUcCG- -5'
24040 3' -58.8 NC_005262.1 + 56747 0.69 0.39134
Target:  5'- cAUGGcCGCCGCgCUG-GC-GUCGGGCg -3'
miRNA:   3'- -UGCCaGCGGCGgGACgUGaUAGUCCG- -5'
24040 3' -58.8 NC_005262.1 + 21065 0.69 0.400173
Target:  5'- aAUGGgggCGCCuGCCCaGCAUUucaCAGGCc -3'
miRNA:   3'- -UGCCa--GCGG-CGGGaCGUGAua-GUCCG- -5'
24040 3' -58.8 NC_005262.1 + 47723 0.68 0.427421
Target:  5'- gGCGGcUCGCCGCCUguaucuggUGCGCcg-CcGGCc -3'
miRNA:   3'- -UGCC-AGCGGCGGG--------ACGUGauaGuCCG- -5'
24040 3' -58.8 NC_005262.1 + 59186 0.68 0.455737
Target:  5'- cACGGgccCGCugauggagCGCCUUGCGaaGUCGGGCc -3'
miRNA:   3'- -UGCCa--GCG--------GCGGGACGUgaUAGUCCG- -5'
24040 3' -58.8 NC_005262.1 + 1112 0.67 0.475166
Target:  5'- cCGGUucCGCCGCCUcuUGCucugcggccGCUG-CGGGCu -3'
miRNA:   3'- uGCCA--GCGGCGGG--ACG---------UGAUaGUCCG- -5'
24040 3' -58.8 NC_005262.1 + 22231 0.67 0.493998
Target:  5'- cACGGccgCGCCGCCCacgccggccggccUGCGC-AUCAcGCc -3'
miRNA:   3'- -UGCCa--GCGGCGGG-------------ACGUGaUAGUcCG- -5'
24040 3' -58.8 NC_005262.1 + 54916 0.67 0.494999
Target:  5'- gACGGcUCGCa--CCUGaCGCUGcCGGGCg -3'
miRNA:   3'- -UGCC-AGCGgcgGGAC-GUGAUaGUCCG- -5'
24040 3' -58.8 NC_005262.1 + 14534 0.67 0.494999
Target:  5'- cAUGGcagUGCCGUgCaUGCGCUGgaucggCAGGCg -3'
miRNA:   3'- -UGCCa--GCGGCGgG-ACGUGAUa-----GUCCG- -5'
24040 3' -58.8 NC_005262.1 + 36527 0.69 0.39134
Target:  5'- gACGGUCGgCGCggcgaCUgGgAUUAUCGGGCg -3'
miRNA:   3'- -UGCCAGCgGCGg----GA-CgUGAUAGUCCG- -5'
24040 3' -58.8 NC_005262.1 + 2962 0.7 0.3254
Target:  5'- gGCGGgcacucaCGCUGCCCgGCA---UCGGGCa -3'
miRNA:   3'- -UGCCa------GCGGCGGGaCGUgauAGUCCG- -5'
24040 3' -58.8 NC_005262.1 + 58216 0.7 0.317762
Target:  5'- aGCGG-CGCCGCCCguacCACgaacUUGGGCa -3'
miRNA:   3'- -UGCCaGCGGCGGGac--GUGau--AGUCCG- -5'
24040 3' -58.8 NC_005262.1 + 21688 0.8 0.070527
Target:  5'- gGCGG-CGCCGCgCUGCugUAcgCGGGCa -3'
miRNA:   3'- -UGCCaGCGGCGgGACGugAUa-GUCCG- -5'
24040 3' -58.8 NC_005262.1 + 6558 0.75 0.173502
Target:  5'- gGCGuGUUGCCGCCgacgagcgGCGCgAUCAGGCu -3'
miRNA:   3'- -UGC-CAGCGGCGGga------CGUGaUAGUCCG- -5'
24040 3' -58.8 NC_005262.1 + 58884 0.73 0.218634
Target:  5'- cGCGcGUuggcugcUGCCGCgCUGCGCgAUCAGGCc -3'
miRNA:   3'- -UGC-CA-------GCGGCGgGACGUGaUAGUCCG- -5'
24040 3' -58.8 NC_005262.1 + 2722 0.72 0.248786
Target:  5'- uGCGGUagCGCuCGCCCUGCGCc-UCgAGGUc -3'
miRNA:   3'- -UGCCA--GCG-GCGGGACGUGauAG-UCCG- -5'
24040 3' -58.8 NC_005262.1 + 58605 0.72 0.248786
Target:  5'- gAUGGggCGCCucgauGCgCUGCACcGUCAGGCu -3'
miRNA:   3'- -UGCCa-GCGG-----CGgGACGUGaUAGUCCG- -5'
24040 3' -58.8 NC_005262.1 + 6290 0.71 0.274775
Target:  5'- uCGGccuUCGCCGCCUucuUGCGCUcgCcGGCc -3'
miRNA:   3'- uGCC---AGCGGCGGG---ACGUGAuaGuCCG- -5'
24040 3' -58.8 NC_005262.1 + 24298 0.71 0.295661
Target:  5'- gACGcUCGCCGCCCUGaUGCUucucgcgaugGUCGGcGCg -3'
miRNA:   3'- -UGCcAGCGGCGGGAC-GUGA----------UAGUC-CG- -5'
24040 3' -58.8 NC_005262.1 + 30484 0.71 0.302893
Target:  5'- gACGG-CGCCGaaauCCUGC---GUCAGGCg -3'
miRNA:   3'- -UGCCaGCGGCg---GGACGugaUAGUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.