Results 21 - 40 of 83 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24040 | 3' | -58.8 | NC_005262.1 | + | 6558 | 0.75 | 0.173502 |
Target: 5'- gGCGuGUUGCCGCCgacgagcgGCGCgAUCAGGCu -3' miRNA: 3'- -UGC-CAGCGGCGGga------CGUGaUAGUCCG- -5' |
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24040 | 3' | -58.8 | NC_005262.1 | + | 58884 | 0.73 | 0.218634 |
Target: 5'- cGCGcGUuggcugcUGCCGCgCUGCGCgAUCAGGCc -3' miRNA: 3'- -UGC-CA-------GCGGCGgGACGUGaUAGUCCG- -5' |
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24040 | 3' | -58.8 | NC_005262.1 | + | 2722 | 0.72 | 0.248786 |
Target: 5'- uGCGGUagCGCuCGCCCUGCGCc-UCgAGGUc -3' miRNA: 3'- -UGCCA--GCG-GCGGGACGUGauAG-UCCG- -5' |
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24040 | 3' | -58.8 | NC_005262.1 | + | 58605 | 0.72 | 0.248786 |
Target: 5'- gAUGGggCGCCucgauGCgCUGCACcGUCAGGCu -3' miRNA: 3'- -UGCCa-GCGG-----CGgGACGUGaUAGUCCG- -5' |
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24040 | 3' | -58.8 | NC_005262.1 | + | 6290 | 0.71 | 0.274775 |
Target: 5'- uCGGccuUCGCCGCCUucuUGCGCUcgCcGGCc -3' miRNA: 3'- uGCC---AGCGGCGGG---ACGUGAuaGuCCG- -5' |
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24040 | 3' | -58.8 | NC_005262.1 | + | 24298 | 0.71 | 0.295661 |
Target: 5'- gACGcUCGCCGCCCUGaUGCUucucgcgaugGUCGGcGCg -3' miRNA: 3'- -UGCcAGCGGCGGGAC-GUGA----------UAGUC-CG- -5' |
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24040 | 3' | -58.8 | NC_005262.1 | + | 30484 | 0.71 | 0.302893 |
Target: 5'- gACGG-CGCCGaaauCCUGC---GUCAGGCg -3' miRNA: 3'- -UGCCaGCGGCg---GGACGugaUAGUCCG- -5' |
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24040 | 3' | -58.8 | NC_005262.1 | + | 59186 | 0.68 | 0.455737 |
Target: 5'- cACGGgccCGCugauggagCGCCUUGCGaaGUCGGGCc -3' miRNA: 3'- -UGCCa--GCG--------GCGGGACGUgaUAGUCCG- -5' |
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24040 | 3' | -58.8 | NC_005262.1 | + | 47723 | 0.68 | 0.427421 |
Target: 5'- gGCGGcUCGCCGCCUguaucuggUGCGCcg-CcGGCc -3' miRNA: 3'- -UGCC-AGCGGCGGG--------ACGUGauaGuCCG- -5' |
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24040 | 3' | -58.8 | NC_005262.1 | + | 21065 | 0.69 | 0.400173 |
Target: 5'- aAUGGgggCGCCuGCCCaGCAUUucaCAGGCc -3' miRNA: 3'- -UGCCa--GCGG-CGGGaCGUGAua-GUCCG- -5' |
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24040 | 3' | -58.8 | NC_005262.1 | + | 56747 | 0.69 | 0.39134 |
Target: 5'- cAUGGcCGCCGCgCUG-GC-GUCGGGCg -3' miRNA: 3'- -UGCCaGCGGCGgGACgUGaUAGUCCG- -5' |
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24040 | 3' | -58.8 | NC_005262.1 | + | 36527 | 0.69 | 0.39134 |
Target: 5'- gACGGUCGgCGCggcgaCUgGgAUUAUCGGGCg -3' miRNA: 3'- -UGCCAGCgGCGg----GA-CgUGAUAGUCCG- -5' |
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24040 | 3' | -58.8 | NC_005262.1 | + | 2962 | 0.7 | 0.3254 |
Target: 5'- gGCGGgcacucaCGCUGCCCgGCA---UCGGGCa -3' miRNA: 3'- -UGCCa------GCGGCGGGaCGUgauAGUCCG- -5' |
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24040 | 3' | -58.8 | NC_005262.1 | + | 58216 | 0.7 | 0.317762 |
Target: 5'- aGCGG-CGCCGCCCguacCACgaacUUGGGCa -3' miRNA: 3'- -UGCCaGCGGCGGGac--GUGau--AGUCCG- -5' |
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24040 | 3' | -58.8 | NC_005262.1 | + | 33289 | 0.66 | 0.567024 |
Target: 5'- gGCGcUCGUCGUCCUGC---GUCGGcGCa -3' miRNA: 3'- -UGCcAGCGGCGGGACGugaUAGUC-CG- -5' |
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24040 | 3' | -58.8 | NC_005262.1 | + | 9040 | 0.66 | 0.575453 |
Target: 5'- gAUGGguggagugCGUCGCCC-GCGCgagggucaaauaAUCGGGCg -3' miRNA: 3'- -UGCCa-------GCGGCGGGaCGUGa-----------UAGUCCG- -5' |
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24040 | 3' | -58.8 | NC_005262.1 | + | 40760 | 0.66 | 0.577565 |
Target: 5'- -gGGUCGUagaCGCUaUGCGCguggGUCGGGUc -3' miRNA: 3'- ugCCAGCG---GCGGgACGUGa---UAGUCCG- -5' |
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24040 | 3' | -58.8 | NC_005262.1 | + | 49935 | 0.66 | 0.577565 |
Target: 5'- cCGGUacCGCCGCCg-GCAC---CGGGCc -3' miRNA: 3'- uGCCA--GCGGCGGgaCGUGauaGUCCG- -5' |
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24040 | 3' | -58.8 | NC_005262.1 | + | 45290 | 0.66 | 0.577565 |
Target: 5'- gGCGGacaUGCCG-CCUGCGagggCAGGCc -3' miRNA: 3'- -UGCCa--GCGGCgGGACGUgauaGUCCG- -5' |
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24040 | 3' | -58.8 | NC_005262.1 | + | 50432 | 0.8 | 0.076689 |
Target: 5'- cGCGGUCGUCGCgggcgcuucguCCUGCGCgg-CGGGCg -3' miRNA: 3'- -UGCCAGCGGCG-----------GGACGUGauaGUCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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