Results 1 - 20 of 83 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24040 | 3' | -58.8 | NC_005262.1 | + | 25337 | 0.66 | 0.577565 |
Target: 5'- gGCGG-CGCaggaGCCggcgUUGCGCgcgguUCGGGCg -3' miRNA: 3'- -UGCCaGCGg---CGG----GACGUGau---AGUCCG- -5' |
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24040 | 3' | -58.8 | NC_005262.1 | + | 11164 | 0.67 | 0.494999 |
Target: 5'- aGCGG--GCCGCCCUuugGCcGCUcgggcUCAGGCg -3' miRNA: 3'- -UGCCagCGGCGGGA---CG-UGAu----AGUCCG- -5' |
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24040 | 3' | -58.8 | NC_005262.1 | + | 61948 | 0.67 | 0.485034 |
Target: 5'- --cGUCGgCGCCUUgGCGCUggggauuuucAUCGGGCa -3' miRNA: 3'- ugcCAGCgGCGGGA-CGUGA----------UAGUCCG- -5' |
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24040 | 3' | -58.8 | NC_005262.1 | + | 50432 | 0.8 | 0.076689 |
Target: 5'- cGCGGUCGUCGCgggcgcuucguCCUGCGCgg-CGGGCg -3' miRNA: 3'- -UGCCAGCGGCG-----------GGACGUGauaGUCCG- -5' |
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24040 | 3' | -58.8 | NC_005262.1 | + | 9040 | 0.66 | 0.575453 |
Target: 5'- gAUGGguggagugCGUCGCCC-GCGCgagggucaaauaAUCGGGCg -3' miRNA: 3'- -UGCCa-------GCGGCGGGaCGUGa-----------UAGUCCG- -5' |
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24040 | 3' | -58.8 | NC_005262.1 | + | 33289 | 0.66 | 0.567024 |
Target: 5'- gGCGcUCGUCGUCCUGC---GUCGGcGCa -3' miRNA: 3'- -UGCcAGCGGCGGGACGugaUAGUC-CG- -5' |
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24040 | 3' | -58.8 | NC_005262.1 | + | 61190 | 0.66 | 0.567024 |
Target: 5'- ---uUCGUCGCCCgGUACaucuucagguUAUCGGGCu -3' miRNA: 3'- ugccAGCGGCGGGaCGUG----------AUAGUCCG- -5' |
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24040 | 3' | -58.8 | NC_005262.1 | + | 57605 | 0.66 | 0.564921 |
Target: 5'- cGCGGUCGauGCCCgGCGCgacgcugaacuUCGGcGCc -3' miRNA: 3'- -UGCCAGCggCGGGaCGUGau---------AGUC-CG- -5' |
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24040 | 3' | -58.8 | NC_005262.1 | + | 52716 | 0.66 | 0.546098 |
Target: 5'- uGCGGUCGCgCGCCacgagccggUGCGCU-UCAgcucgcccGGCu -3' miRNA: 3'- -UGCCAGCG-GCGGg--------ACGUGAuAGU--------CCG- -5' |
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24040 | 3' | -58.8 | NC_005262.1 | + | 25270 | 0.67 | 0.505056 |
Target: 5'- cUGGUCGUCGCCCUuGaugaugaucUugUA-CAGGCg -3' miRNA: 3'- uGCCAGCGGCGGGA-C---------GugAUaGUCCG- -5' |
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24040 | 3' | -58.8 | NC_005262.1 | + | 20671 | 0.66 | 0.535727 |
Target: 5'- uGCGGcgCGCCGCgCgCUGCuCgc-CGGGCu -3' miRNA: 3'- -UGCCa-GCGGCG-G-GACGuGauaGUCCG- -5' |
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24040 | 3' | -58.8 | NC_005262.1 | + | 58114 | 0.66 | 0.556533 |
Target: 5'- gACGGUC-CUGCCCuugcUGCGCUGUacucgcccugCuGGCc -3' miRNA: 3'- -UGCCAGcGGCGGG----ACGUGAUA----------GuCCG- -5' |
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24040 | 3' | -58.8 | NC_005262.1 | + | 45290 | 0.66 | 0.577565 |
Target: 5'- gGCGGacaUGCCG-CCUGCGagggCAGGCc -3' miRNA: 3'- -UGCCa--GCGGCgGGACGUgauaGUCCG- -5' |
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24040 | 3' | -58.8 | NC_005262.1 | + | 58290 | 0.67 | 0.525425 |
Target: 5'- gGCGG-CGCCGCUCU-C-Cg--CAGGCg -3' miRNA: 3'- -UGCCaGCGGCGGGAcGuGauaGUCCG- -5' |
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24040 | 3' | -58.8 | NC_005262.1 | + | 49935 | 0.66 | 0.577565 |
Target: 5'- cCGGUacCGCCGCCg-GCAC---CGGGCc -3' miRNA: 3'- uGCCA--GCGGCGGgaCGUGauaGUCCG- -5' |
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24040 | 3' | -58.8 | NC_005262.1 | + | 38825 | 0.66 | 0.556533 |
Target: 5'- aGCGGgaaccaGUCGCCa-GCGCUgagcGUCGGGUa -3' miRNA: 3'- -UGCCag----CGGCGGgaCGUGA----UAGUCCG- -5' |
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24040 | 3' | -58.8 | NC_005262.1 | + | 17834 | 0.67 | 0.505056 |
Target: 5'- aGCGuGUCGuCCGCCCgcuucaccgUGCcgACUAcuuccggcUCGGGCu -3' miRNA: 3'- -UGC-CAGC-GGCGGG---------ACG--UGAU--------AGUCCG- -5' |
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24040 | 3' | -58.8 | NC_005262.1 | + | 51019 | 0.67 | 0.485034 |
Target: 5'- gGCGGccggcaccaucuUCGUuucgugcucgaUGCCCUGCGCguUCAGGUg -3' miRNA: 3'- -UGCC------------AGCG-----------GCGGGACGUGauAGUCCG- -5' |
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24040 | 3' | -58.8 | NC_005262.1 | + | 40760 | 0.66 | 0.577565 |
Target: 5'- -gGGUCGUagaCGCUaUGCGCguggGUCGGGUc -3' miRNA: 3'- ugCCAGCG---GCGGgACGUGa---UAGUCCG- -5' |
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24040 | 3' | -58.8 | NC_005262.1 | + | 47359 | 0.66 | 0.567024 |
Target: 5'- cGCGGcguccguuuUCGCCuuGUCCUGCGCcugCuGGCg -3' miRNA: 3'- -UGCC---------AGCGG--CGGGACGUGauaGuCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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