miRNA display CGI


Results 1 - 20 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24040 5' -52.9 NC_005262.1 + 49292 0.66 0.860958
Target:  5'- -aGGCCGcCcuCGGCCAGCAuGCCGg -3'
miRNA:   3'- caCUGGCuGuuGUUGGUCGUcUGGUg -5'
24040 5' -52.9 NC_005262.1 + 2251 0.66 0.860958
Target:  5'- -cGuCCGACAAUAGCCGcgcugaugcGCuGACCGa -3'
miRNA:   3'- caCuGGCUGUUGUUGGU---------CGuCUGGUg -5'
24040 5' -52.9 NC_005262.1 + 47328 0.66 0.860122
Target:  5'- -cGACCGAuuCGGCGcucgagacgcagcGCCAGaaAGGCCGCa -3'
miRNA:   3'- caCUGGCU--GUUGU-------------UGGUCg-UCUGGUG- -5'
24040 5' -52.9 NC_005262.1 + 58906 0.66 0.859285
Target:  5'- --cGCCG-CAGCAGCCAGCcuucacggcgccGAUCACg -3'
miRNA:   3'- cacUGGCuGUUGUUGGUCGu-----------CUGGUG- -5'
24040 5' -52.9 NC_005262.1 + 57855 0.66 0.857602
Target:  5'- -aGAUCGACGGCAAgcuauacgccguguCCAGCuccugcgucgugaAGAUCGCg -3'
miRNA:   3'- caCUGGCUGUUGUU--------------GGUCG-------------UCUGGUG- -5'
24040 5' -52.9 NC_005262.1 + 52708 0.66 0.852497
Target:  5'- -cGGCCGAC----GCCGGacgAGGCCGCg -3'
miRNA:   3'- caCUGGCUGuuguUGGUCg--UCUGGUG- -5'
24040 5' -52.9 NC_005262.1 + 19880 0.66 0.852497
Target:  5'- -cGACCGcccgauguGCGACGACCAcGCGcacgagauuGGCCAUg -3'
miRNA:   3'- caCUGGC--------UGUUGUUGGU-CGU---------CUGGUG- -5'
24040 5' -52.9 NC_005262.1 + 53013 0.66 0.852497
Target:  5'- aUGcCCGACAGCAugGCC-GC-GACCAg -3'
miRNA:   3'- cACuGGCUGUUGU--UGGuCGuCUGGUg -5'
24040 5' -52.9 NC_005262.1 + 43440 0.66 0.852497
Target:  5'- -cGAUCGACGGCGACgCGcuuguGCGGAUCGa -3'
miRNA:   3'- caCUGGCUGUUGUUG-GU-----CGUCUGGUg -5'
24040 5' -52.9 NC_005262.1 + 46715 0.66 0.852497
Target:  5'- aGUGgacaaGCCGGC-GCAAuCCGGCAcGACCGg -3'
miRNA:   3'- -CAC-----UGGCUGuUGUU-GGUCGU-CUGGUg -5'
24040 5' -52.9 NC_005262.1 + 5504 0.66 0.852497
Target:  5'- -aGGCCG-CGACGACCGGaccgGGAUCGu -3'
miRNA:   3'- caCUGGCuGUUGUUGGUCg---UCUGGUg -5'
24040 5' -52.9 NC_005262.1 + 32131 0.66 0.852497
Target:  5'- -cGACgGACAugcGCAcCgCAGCGGGCgGCa -3'
miRNA:   3'- caCUGgCUGU---UGUuG-GUCGUCUGgUG- -5'
24040 5' -52.9 NC_005262.1 + 45397 0.66 0.852497
Target:  5'- -gGGCgGcGCAGCAGCaGGCAG-CCGCg -3'
miRNA:   3'- caCUGgC-UGUUGUUGgUCGUCuGGUG- -5'
24040 5' -52.9 NC_005262.1 + 19342 0.66 0.851637
Target:  5'- cUGGCCGGCGACuacaucGACCGccugaacGCGGAgUACa -3'
miRNA:   3'- cACUGGCUGUUG------UUGGU-------CGUCUgGUG- -5'
24040 5' -52.9 NC_005262.1 + 17467 0.66 0.851637
Target:  5'- -cGGCCGcCGAguCGACCGGCAgguucuuGAUCGCg -3'
miRNA:   3'- caCUGGCuGUU--GUUGGUCGU-------CUGGUG- -5'
24040 5' -52.9 NC_005262.1 + 11179 0.66 0.843798
Target:  5'- ---cCCGcCAAgcguGCCAGCGGGCCGCc -3'
miRNA:   3'- cacuGGCuGUUgu--UGGUCGUCUGGUG- -5'
24040 5' -52.9 NC_005262.1 + 2866 0.66 0.843798
Target:  5'- cUGAUCGACGACaaggAugCGGCAcccGCCGCc -3'
miRNA:   3'- cACUGGCUGUUG----UugGUCGUc--UGGUG- -5'
24040 5' -52.9 NC_005262.1 + 40856 0.66 0.843798
Target:  5'- -gGACgGGCAucaGCAcgcaaaauGCCGGCAGcggcACCGCa -3'
miRNA:   3'- caCUGgCUGU---UGU--------UGGUCGUC----UGGUG- -5'
24040 5' -52.9 NC_005262.1 + 58256 0.66 0.843798
Target:  5'- -aGGCUGGCGGgAuuccCCAGCcuGACCGCu -3'
miRNA:   3'- caCUGGCUGUUgUu---GGUCGu-CUGGUG- -5'
24040 5' -52.9 NC_005262.1 + 348 0.66 0.841143
Target:  5'- aGUGACCGGCuccggcugcuggguGGCGaggaugucaGCgAGCAGcCCGCg -3'
miRNA:   3'- -CACUGGCUG--------------UUGU---------UGgUCGUCuGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.