miRNA display CGI


Results 1 - 20 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24040 5' -52.9 NC_005262.1 + 32017 0.66 0.833964
Target:  5'- -aGGCCGugGAaaaGGCCGcgaugauGCAGGCCGa -3'
miRNA:   3'- caCUGGCugUUg--UUGGU-------CGUCUGGUg -5'
24040 5' -52.9 NC_005262.1 + 33902 0.66 0.825721
Target:  5'- -cGGCCGGCGGCccGAUCGGUAG-CgGCg -3'
miRNA:   3'- caCUGGCUGUUG--UUGGUCGUCuGgUG- -5'
24040 5' -52.9 NC_005262.1 + 52708 0.66 0.852497
Target:  5'- -cGGCCGAC----GCCGGacgAGGCCGCg -3'
miRNA:   3'- caCUGGCUGuuguUGGUCg--UCUGGUG- -5'
24040 5' -52.9 NC_005262.1 + 47328 0.66 0.860122
Target:  5'- -cGACCGAuuCGGCGcucgagacgcagcGCCAGaaAGGCCGCa -3'
miRNA:   3'- caCUGGCU--GUUGU-------------UGGUCg-UCUGGUG- -5'
24040 5' -52.9 NC_005262.1 + 5504 0.66 0.852497
Target:  5'- -aGGCCG-CGACGACCGGaccgGGAUCGu -3'
miRNA:   3'- caCUGGCuGUUGUUGGUCg---UCUGGUg -5'
24040 5' -52.9 NC_005262.1 + 45397 0.66 0.852497
Target:  5'- -gGGCgGcGCAGCAGCaGGCAG-CCGCg -3'
miRNA:   3'- caCUGgC-UGUUGUUGgUCGUCuGGUG- -5'
24040 5' -52.9 NC_005262.1 + 47148 0.66 0.83487
Target:  5'- -aGGUCGAC-GCGACCGGCgAGGCgCGCa -3'
miRNA:   3'- caCUGGCUGuUGUUGGUCG-UCUG-GUG- -5'
24040 5' -52.9 NC_005262.1 + 58256 0.66 0.843798
Target:  5'- -aGGCUGGCGGgAuuccCCAGCcuGACCGCu -3'
miRNA:   3'- caCUGGCUGUUgUu---GGUCGu-CUGGUG- -5'
24040 5' -52.9 NC_005262.1 + 32131 0.66 0.852497
Target:  5'- -cGACgGACAugcGCAcCgCAGCGGGCgGCa -3'
miRNA:   3'- caCUGgCUGU---UGUuG-GUCGUCUGgUG- -5'
24040 5' -52.9 NC_005262.1 + 51372 0.66 0.83487
Target:  5'- --cGCCGuccGCGAC-GCCGGCcaAGGCCGCg -3'
miRNA:   3'- cacUGGC---UGUUGuUGGUCG--UCUGGUG- -5'
24040 5' -52.9 NC_005262.1 + 40856 0.66 0.843798
Target:  5'- -gGACgGGCAucaGCAcgcaaaauGCCGGCAGcggcACCGCa -3'
miRNA:   3'- caCUGgCUGU---UGU--------UGGUCGUC----UGGUG- -5'
24040 5' -52.9 NC_005262.1 + 43440 0.66 0.852497
Target:  5'- -cGAUCGACGGCGACgCGcuuguGCGGAUCGa -3'
miRNA:   3'- caCUGGCUGUUGUUG-GU-----CGUCUGGUg -5'
24040 5' -52.9 NC_005262.1 + 59126 0.66 0.83487
Target:  5'- --cGCCGAgGcgAACCGGCcGGGCCGCg -3'
miRNA:   3'- cacUGGCUgUugUUGGUCG-UCUGGUG- -5'
24040 5' -52.9 NC_005262.1 + 41261 0.66 0.83487
Target:  5'- cUGA-CGGCGGCGAUCAcGCAGauucgGCCGCg -3'
miRNA:   3'- cACUgGCUGUUGUUGGU-CGUC-----UGGUG- -5'
24040 5' -52.9 NC_005262.1 + 15225 0.66 0.825721
Target:  5'- --cACCGAguACGugaAGCAGGCCGCa -3'
miRNA:   3'- cacUGGCUguUGUuggUCGUCUGGUG- -5'
24040 5' -52.9 NC_005262.1 + 57855 0.66 0.857602
Target:  5'- -aGAUCGACGGCAAgcuauacgccguguCCAGCuccugcgucgugaAGAUCGCg -3'
miRNA:   3'- caCUGGCUGUUGUU--------------GGUCG-------------UCUGGUG- -5'
24040 5' -52.9 NC_005262.1 + 53013 0.66 0.852497
Target:  5'- aUGcCCGACAGCAugGCC-GC-GACCAg -3'
miRNA:   3'- cACuGGCUGUUGU--UGGuCGuCUGGUg -5'
24040 5' -52.9 NC_005262.1 + 46715 0.66 0.852497
Target:  5'- aGUGgacaaGCCGGC-GCAAuCCGGCAcGACCGg -3'
miRNA:   3'- -CAC-----UGGCUGuUGUU-GGUCGU-CUGGUg -5'
24040 5' -52.9 NC_005262.1 + 348 0.66 0.841143
Target:  5'- aGUGACCGGCuccggcugcuggguGGCGaggaugucaGCgAGCAGcCCGCg -3'
miRNA:   3'- -CACUGGCUG--------------UUGU---------UGgUCGUCuGGUG- -5'
24040 5' -52.9 NC_005262.1 + 58952 0.66 0.825721
Target:  5'- -cGGCgCG-CAGCAgucgaACCAGCcGGCCGCc -3'
miRNA:   3'- caCUG-GCuGUUGU-----UGGUCGuCUGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.