miRNA display CGI


Results 21 - 40 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24040 5' -52.9 NC_005262.1 + 41261 0.66 0.83487
Target:  5'- cUGA-CGGCGGCGAUCAcGCAGauucgGCCGCg -3'
miRNA:   3'- cACUgGCUGUUGUUGGU-CGUC-----UGGUG- -5'
24040 5' -52.9 NC_005262.1 + 43440 0.66 0.852497
Target:  5'- -cGAUCGACGGCGACgCGcuuguGCGGAUCGa -3'
miRNA:   3'- caCUGGCUGUUGUUG-GU-----CGUCUGGUg -5'
24040 5' -52.9 NC_005262.1 + 52708 0.66 0.852497
Target:  5'- -cGGCCGAC----GCCGGacgAGGCCGCg -3'
miRNA:   3'- caCUGGCUGuuguUGGUCg--UCUGGUG- -5'
24040 5' -52.9 NC_005262.1 + 47148 0.66 0.83487
Target:  5'- -aGGUCGAC-GCGACCGGCgAGGCgCGCa -3'
miRNA:   3'- caCUGGCUGuUGUUGGUCG-UCUG-GUG- -5'
24040 5' -52.9 NC_005262.1 + 45397 0.66 0.852497
Target:  5'- -gGGCgGcGCAGCAGCaGGCAG-CCGCg -3'
miRNA:   3'- caCUGgC-UGUUGUUGgUCGUCuGGUG- -5'
24040 5' -52.9 NC_005262.1 + 53013 0.66 0.852497
Target:  5'- aUGcCCGACAGCAugGCC-GC-GACCAg -3'
miRNA:   3'- cACuGGCUGUUGU--UGGuCGuCUGGUg -5'
24040 5' -52.9 NC_005262.1 + 15225 0.66 0.825721
Target:  5'- --cACCGAguACGugaAGCAGGCCGCa -3'
miRNA:   3'- cacUGGCUguUGUuggUCGUCUGGUG- -5'
24040 5' -52.9 NC_005262.1 + 57855 0.66 0.857602
Target:  5'- -aGAUCGACGGCAAgcuauacgccguguCCAGCuccugcgucgugaAGAUCGCg -3'
miRNA:   3'- caCUGGCUGUUGUU--------------GGUCG-------------UCUGGUG- -5'
24040 5' -52.9 NC_005262.1 + 17467 0.66 0.851637
Target:  5'- -cGGCCGcCGAguCGACCGGCAgguucuuGAUCGCg -3'
miRNA:   3'- caCUGGCuGUU--GUUGGUCGU-------CUGGUG- -5'
24040 5' -52.9 NC_005262.1 + 32017 0.66 0.833964
Target:  5'- -aGGCCGugGAaaaGGCCGcgaugauGCAGGCCGa -3'
miRNA:   3'- caCUGGCugUUg--UUGGU-------CGUCUGGUg -5'
24040 5' -52.9 NC_005262.1 + 43838 0.67 0.77704
Target:  5'- -gGGCCGGCcGC-GCgCGGCGGugCGCc -3'
miRNA:   3'- caCUGGCUGuUGuUG-GUCGUCugGUG- -5'
24040 5' -52.9 NC_005262.1 + 56898 0.67 0.78613
Target:  5'- --aGCgCGACAACAcgcucGCCGGCgagaucaAGGCCGCg -3'
miRNA:   3'- cacUG-GCUGUUGU-----UGGUCG-------UCUGGUG- -5'
24040 5' -52.9 NC_005262.1 + 55928 0.67 0.803899
Target:  5'- -cGACCGuccggcgaucgaggGCGGCGGCCGuCAGAUCAUg -3'
miRNA:   3'- caCUGGC--------------UGUUGUUGGUcGUCUGGUG- -5'
24040 5' -52.9 NC_005262.1 + 23834 0.67 0.806804
Target:  5'- ---cUCGGCAACGuagGCCGGCAcGCCGCc -3'
miRNA:   3'- cacuGGCUGUUGU---UGGUCGUcUGGUG- -5'
24040 5' -52.9 NC_005262.1 + 49589 0.67 0.806804
Target:  5'- -aGGCCGACAAgAAUguGUcgcucGGCCGCg -3'
miRNA:   3'- caCUGGCUGUUgUUGguCGu----CUGGUG- -5'
24040 5' -52.9 NC_005262.1 + 35628 0.67 0.77704
Target:  5'- -cGuCCGGCAACGGCacgCGGCGGGCgAUg -3'
miRNA:   3'- caCuGGCUGUUGUUG---GUCGUCUGgUG- -5'
24040 5' -52.9 NC_005262.1 + 50648 0.67 0.816362
Target:  5'- --cGCCGAgCAGCAACCGGCu--CCAg -3'
miRNA:   3'- cacUGGCU-GUUGUUGGUCGucuGGUg -5'
24040 5' -52.9 NC_005262.1 + 51184 0.67 0.816362
Target:  5'- --aGCCGACGACG--CGGCGGcCCGCu -3'
miRNA:   3'- cacUGGCUGUUGUugGUCGUCuGGUG- -5'
24040 5' -52.9 NC_005262.1 + 49452 0.67 0.82013
Target:  5'- cGUGACCGagaaggucagcaagaGCAcgcugaagcgcGCAuucuCCGGCGGugCGCg -3'
miRNA:   3'- -CACUGGC---------------UGU-----------UGUu---GGUCGUCugGUG- -5'
24040 5' -52.9 NC_005262.1 + 12916 0.67 0.816362
Target:  5'- cUGGaCGACGACAACCuGCGcGGCgCGCu -3'
miRNA:   3'- cACUgGCUGUUGUUGGuCGU-CUG-GUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.