miRNA display CGI


Results 1 - 20 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24040 5' -52.9 NC_005262.1 + 34361 1.09 0.001813
Target:  5'- cGUGACCGACAACAACCAGCAGACCACc -3'
miRNA:   3'- -CACUGGCUGUUGUUGGUCGUCUGGUG- -5'
24040 5' -52.9 NC_005262.1 + 18990 0.77 0.279846
Target:  5'- uUG-UCGACAACGACCGGCAGcCCAg -3'
miRNA:   3'- cACuGGCUGUUGUUGGUCGUCuGGUg -5'
24040 5' -52.9 NC_005262.1 + 26521 0.77 0.279846
Target:  5'- aUGACCGAgccCGACAagACCGGCGG-CCACu -3'
miRNA:   3'- cACUGGCU---GUUGU--UGGUCGUCuGGUG- -5'
24040 5' -52.9 NC_005262.1 + 33758 0.75 0.333777
Target:  5'- uUGGCCGuguacGCGGCGACCAGCgAGGCgCGCu -3'
miRNA:   3'- cACUGGC-----UGUUGUUGGUCG-UCUG-GUG- -5'
24040 5' -52.9 NC_005262.1 + 55743 0.75 0.359116
Target:  5'- cGUGACCGGCGu--GCCGGaCGcGGCCACg -3'
miRNA:   3'- -CACUGGCUGUuguUGGUC-GU-CUGGUG- -5'
24040 5' -52.9 NC_005262.1 + 34242 0.74 0.423279
Target:  5'- cGUG-CCGGCGACGGCCGGCGGGu--- -3'
miRNA:   3'- -CACuGGCUGUUGUUGGUCGUCUggug -5'
24040 5' -52.9 NC_005262.1 + 57426 0.73 0.432993
Target:  5'- -cGGCCGACAACGcuCCGGCAccGuCCGCg -3'
miRNA:   3'- caCUGGCUGUUGUu-GGUCGU--CuGGUG- -5'
24040 5' -52.9 NC_005262.1 + 10889 0.73 0.432993
Target:  5'- cGUGAUCGucGCGGCAGCucgcgCAGCAGuACCGCg -3'
miRNA:   3'- -CACUGGC--UGUUGUUG-----GUCGUC-UGGUG- -5'
24040 5' -52.9 NC_005262.1 + 62607 0.73 0.442836
Target:  5'- -aGGCCGGCGAUuuucGCCAGCAGGaCGCc -3'
miRNA:   3'- caCUGGCUGUUGu---UGGUCGUCUgGUG- -5'
24040 5' -52.9 NC_005262.1 + 20736 0.73 0.442836
Target:  5'- uGUGaggaGCCGGCAGCGGCCGGCAaGAugguuUCACg -3'
miRNA:   3'- -CAC----UGGCUGUUGUUGGUCGU-CU-----GGUG- -5'
24040 5' -52.9 NC_005262.1 + 5177 0.73 0.4498
Target:  5'- -cGGCCGGCGucgcgggcgcgggcGCGGCCGGCGcGACCGa -3'
miRNA:   3'- caCUGGCUGU--------------UGUUGGUCGU-CUGGUg -5'
24040 5' -52.9 NC_005262.1 + 47822 0.73 0.452804
Target:  5'- -cGGCCGGCGGCGcACCAGauaCAGGCgGCg -3'
miRNA:   3'- caCUGGCUGUUGU-UGGUC---GUCUGgUG- -5'
24040 5' -52.9 NC_005262.1 + 3772 0.73 0.473098
Target:  5'- --cGCCGGCAucaccgucgucACGGCCAGCGacGGCCGCg -3'
miRNA:   3'- cacUGGCUGU-----------UGUUGGUCGU--CUGGUG- -5'
24040 5' -52.9 NC_005262.1 + 30056 0.73 0.473098
Target:  5'- -aGACCGACGAUgcuGCCGGC-GACgACg -3'
miRNA:   3'- caCUGGCUGUUGu--UGGUCGuCUGgUG- -5'
24040 5' -52.9 NC_005262.1 + 39760 0.73 0.473098
Target:  5'- -gGAUCGACaAGCcGCCAGCcGACCAUc -3'
miRNA:   3'- caCUGGCUG-UUGuUGGUCGuCUGGUG- -5'
24040 5' -52.9 NC_005262.1 + 53367 0.72 0.493839
Target:  5'- cUGAUCGGCGcCAugcGCCugccGCAGACCGCg -3'
miRNA:   3'- cACUGGCUGUuGU---UGGu---CGUCUGGUG- -5'
24040 5' -52.9 NC_005262.1 + 46650 0.72 0.536492
Target:  5'- aUGGCCGACAGCGgcagcauggcGCCGGCAccGAcgcCCGCc -3'
miRNA:   3'- cACUGGCUGUUGU----------UGGUCGU--CU---GGUG- -5'
24040 5' -52.9 NC_005262.1 + 10488 0.72 0.536492
Target:  5'- -cGACCaGCAGCAgcGCCAGCAuggcGGCCAg -3'
miRNA:   3'- caCUGGcUGUUGU--UGGUCGU----CUGGUg -5'
24040 5' -52.9 NC_005262.1 + 49213 0.72 0.536492
Target:  5'- cUGGCCGAgGGCGGCCucggcggcgcGCAGuCCGCg -3'
miRNA:   3'- cACUGGCUgUUGUUGGu---------CGUCuGGUG- -5'
24040 5' -52.9 NC_005262.1 + 17855 0.71 0.547363
Target:  5'- -cGGCCGuCGACAGCUacgaGGUcGACCACg -3'
miRNA:   3'- caCUGGCuGUUGUUGG----UCGuCUGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.