miRNA display CGI


Results 21 - 40 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24040 5' -52.9 NC_005262.1 + 24646 0.71 0.558302
Target:  5'- -cGACgGAC-GCGAUCAGCAgGAUCACg -3'
miRNA:   3'- caCUGgCUGuUGUUGGUCGU-CUGGUG- -5'
24040 5' -52.9 NC_005262.1 + 12310 0.71 0.558302
Target:  5'- cGUGuuCGACGGCAugCGGCucguGCCGCa -3'
miRNA:   3'- -CACugGCUGUUGUugGUCGuc--UGGUG- -5'
24040 5' -52.9 NC_005262.1 + 51298 0.71 0.573717
Target:  5'- -gGugCGAuCAGCAucgcccgcgcggcuCCAGCGGGCCGCc -3'
miRNA:   3'- caCugGCU-GUUGUu-------------GGUCGUCUGGUG- -5'
24040 5' -52.9 NC_005262.1 + 15364 0.71 0.577034
Target:  5'- -cGACUGGCAGCAuCCAugccgcgucgaaguGCAGGCCGg -3'
miRNA:   3'- caCUGGCUGUUGUuGGU--------------CGUCUGGUg -5'
24040 5' -52.9 NC_005262.1 + 31570 0.71 0.580355
Target:  5'- -gGACguCGACGGCGAggUCGGCGGACCAa -3'
miRNA:   3'- caCUG--GCUGUUGUU--GGUCGUCUGGUg -5'
24040 5' -52.9 NC_005262.1 + 59053 0.71 0.580355
Target:  5'- -aGGCCGcCGGCGGCCGGCugguucGACUGCu -3'
miRNA:   3'- caCUGGCuGUUGUUGGUCGu-----CUGGUG- -5'
24040 5' -52.9 NC_005262.1 + 32956 0.71 0.580355
Target:  5'- -cGACCGGCAACcaccguucGAUCGGCgugaAGAUCACg -3'
miRNA:   3'- caCUGGCUGUUG--------UUGGUCG----UCUGGUG- -5'
24040 5' -52.9 NC_005262.1 + 48351 0.71 0.581463
Target:  5'- -cGACCGACccggcgcugcuGGCGGCCGGCuaucagucggguuacGACCGCg -3'
miRNA:   3'- caCUGGCUG-----------UUGUUGGUCGu--------------CUGGUG- -5'
24040 5' -52.9 NC_005262.1 + 48451 0.71 0.591452
Target:  5'- -cGACUGAUAGCcggccGCCAGCAGcGCCGg -3'
miRNA:   3'- caCUGGCUGUUGu----UGGUCGUC-UGGUg -5'
24040 5' -52.9 NC_005262.1 + 5045 0.71 0.591452
Target:  5'- -cGGCCGGCGccugauCGGCgGGCAGGCCcGCg -3'
miRNA:   3'- caCUGGCUGUu-----GUUGgUCGUCUGG-UG- -5'
24040 5' -52.9 NC_005262.1 + 49910 0.71 0.591452
Target:  5'- -cGG-CGACGACGGgCAGCAGuACCGCc -3'
miRNA:   3'- caCUgGCUGUUGUUgGUCGUC-UGGUG- -5'
24040 5' -52.9 NC_005262.1 + 11581 0.7 0.60147
Target:  5'- --uGCCGGCGGCGGCCAGCGcucGAgcgacuuCCACa -3'
miRNA:   3'- cacUGGCUGUUGUUGGUCGU---CU-------GGUG- -5'
24040 5' -52.9 NC_005262.1 + 26015 0.7 0.602584
Target:  5'- -cGACCGAgGGCAcguacuacgcCCAGCAGcucGCCGCg -3'
miRNA:   3'- caCUGGCUgUUGUu---------GGUCGUC---UGGUG- -5'
24040 5' -52.9 NC_005262.1 + 41177 0.7 0.602584
Target:  5'- cGUGGCCGGCGGCGuugACgAGCGuGCCGg -3'
miRNA:   3'- -CACUGGCUGUUGU---UGgUCGUcUGGUg -5'
24040 5' -52.9 NC_005262.1 + 10556 0.7 0.602584
Target:  5'- -cGACCGGCcgcgcGCAGCC-GCAGcguACCGCg -3'
miRNA:   3'- caCUGGCUGu----UGUUGGuCGUC---UGGUG- -5'
24040 5' -52.9 NC_005262.1 + 14521 0.7 0.602584
Target:  5'- -cGAUCGGCAACAGCaUGGCAGuGCCGu -3'
miRNA:   3'- caCUGGCUGUUGUUG-GUCGUC-UGGUg -5'
24040 5' -52.9 NC_005262.1 + 44981 0.7 0.613743
Target:  5'- -gGGCCGACGuGCAGCaguccgcgCGGCAGGCgGCg -3'
miRNA:   3'- caCUGGCUGU-UGUUG--------GUCGUCUGgUG- -5'
24040 5' -52.9 NC_005262.1 + 51528 0.7 0.613743
Target:  5'- -cGACCGugcgcaacACGGCGACCGGCucgcGuACCACg -3'
miRNA:   3'- caCUGGC--------UGUUGUUGGUCGu---C-UGGUG- -5'
24040 5' -52.9 NC_005262.1 + 30225 0.7 0.624918
Target:  5'- --cGCCGGCGcuucgGCGACCAGCAG-CgGCa -3'
miRNA:   3'- cacUGGCUGU-----UGUUGGUCGUCuGgUG- -5'
24040 5' -52.9 NC_005262.1 + 40562 0.7 0.624918
Target:  5'- --cGCCgGGCAAC-ACCGGCGGuGCCGCg -3'
miRNA:   3'- cacUGG-CUGUUGuUGGUCGUC-UGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.