Results 1 - 20 of 148 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24040 | 5' | -52.9 | NC_005262.1 | + | 49292 | 0.66 | 0.860958 |
Target: 5'- -aGGCCGcCcuCGGCCAGCAuGCCGg -3' miRNA: 3'- caCUGGCuGuuGUUGGUCGUcUGGUg -5' |
|||||||
24040 | 5' | -52.9 | NC_005262.1 | + | 2251 | 0.66 | 0.860958 |
Target: 5'- -cGuCCGACAAUAGCCGcgcugaugcGCuGACCGa -3' miRNA: 3'- caCuGGCUGUUGUUGGU---------CGuCUGGUg -5' |
|||||||
24040 | 5' | -52.9 | NC_005262.1 | + | 47328 | 0.66 | 0.860122 |
Target: 5'- -cGACCGAuuCGGCGcucgagacgcagcGCCAGaaAGGCCGCa -3' miRNA: 3'- caCUGGCU--GUUGU-------------UGGUCg-UCUGGUG- -5' |
|||||||
24040 | 5' | -52.9 | NC_005262.1 | + | 58906 | 0.66 | 0.859285 |
Target: 5'- --cGCCG-CAGCAGCCAGCcuucacggcgccGAUCACg -3' miRNA: 3'- cacUGGCuGUUGUUGGUCGu-----------CUGGUG- -5' |
|||||||
24040 | 5' | -52.9 | NC_005262.1 | + | 57855 | 0.66 | 0.857602 |
Target: 5'- -aGAUCGACGGCAAgcuauacgccguguCCAGCuccugcgucgugaAGAUCGCg -3' miRNA: 3'- caCUGGCUGUUGUU--------------GGUCG-------------UCUGGUG- -5' |
|||||||
24040 | 5' | -52.9 | NC_005262.1 | + | 52708 | 0.66 | 0.852497 |
Target: 5'- -cGGCCGAC----GCCGGacgAGGCCGCg -3' miRNA: 3'- caCUGGCUGuuguUGGUCg--UCUGGUG- -5' |
|||||||
24040 | 5' | -52.9 | NC_005262.1 | + | 19880 | 0.66 | 0.852497 |
Target: 5'- -cGACCGcccgauguGCGACGACCAcGCGcacgagauuGGCCAUg -3' miRNA: 3'- caCUGGC--------UGUUGUUGGU-CGU---------CUGGUG- -5' |
|||||||
24040 | 5' | -52.9 | NC_005262.1 | + | 53013 | 0.66 | 0.852497 |
Target: 5'- aUGcCCGACAGCAugGCC-GC-GACCAg -3' miRNA: 3'- cACuGGCUGUUGU--UGGuCGuCUGGUg -5' |
|||||||
24040 | 5' | -52.9 | NC_005262.1 | + | 43440 | 0.66 | 0.852497 |
Target: 5'- -cGAUCGACGGCGACgCGcuuguGCGGAUCGa -3' miRNA: 3'- caCUGGCUGUUGUUG-GU-----CGUCUGGUg -5' |
|||||||
24040 | 5' | -52.9 | NC_005262.1 | + | 46715 | 0.66 | 0.852497 |
Target: 5'- aGUGgacaaGCCGGC-GCAAuCCGGCAcGACCGg -3' miRNA: 3'- -CAC-----UGGCUGuUGUU-GGUCGU-CUGGUg -5' |
|||||||
24040 | 5' | -52.9 | NC_005262.1 | + | 5504 | 0.66 | 0.852497 |
Target: 5'- -aGGCCG-CGACGACCGGaccgGGAUCGu -3' miRNA: 3'- caCUGGCuGUUGUUGGUCg---UCUGGUg -5' |
|||||||
24040 | 5' | -52.9 | NC_005262.1 | + | 32131 | 0.66 | 0.852497 |
Target: 5'- -cGACgGACAugcGCAcCgCAGCGGGCgGCa -3' miRNA: 3'- caCUGgCUGU---UGUuG-GUCGUCUGgUG- -5' |
|||||||
24040 | 5' | -52.9 | NC_005262.1 | + | 45397 | 0.66 | 0.852497 |
Target: 5'- -gGGCgGcGCAGCAGCaGGCAG-CCGCg -3' miRNA: 3'- caCUGgC-UGUUGUUGgUCGUCuGGUG- -5' |
|||||||
24040 | 5' | -52.9 | NC_005262.1 | + | 19342 | 0.66 | 0.851637 |
Target: 5'- cUGGCCGGCGACuacaucGACCGccugaacGCGGAgUACa -3' miRNA: 3'- cACUGGCUGUUG------UUGGU-------CGUCUgGUG- -5' |
|||||||
24040 | 5' | -52.9 | NC_005262.1 | + | 17467 | 0.66 | 0.851637 |
Target: 5'- -cGGCCGcCGAguCGACCGGCAgguucuuGAUCGCg -3' miRNA: 3'- caCUGGCuGUU--GUUGGUCGU-------CUGGUG- -5' |
|||||||
24040 | 5' | -52.9 | NC_005262.1 | + | 11179 | 0.66 | 0.843798 |
Target: 5'- ---cCCGcCAAgcguGCCAGCGGGCCGCc -3' miRNA: 3'- cacuGGCuGUUgu--UGGUCGUCUGGUG- -5' |
|||||||
24040 | 5' | -52.9 | NC_005262.1 | + | 2866 | 0.66 | 0.843798 |
Target: 5'- cUGAUCGACGACaaggAugCGGCAcccGCCGCc -3' miRNA: 3'- cACUGGCUGUUG----UugGUCGUc--UGGUG- -5' |
|||||||
24040 | 5' | -52.9 | NC_005262.1 | + | 40856 | 0.66 | 0.843798 |
Target: 5'- -gGACgGGCAucaGCAcgcaaaauGCCGGCAGcggcACCGCa -3' miRNA: 3'- caCUGgCUGU---UGU--------UGGUCGUC----UGGUG- -5' |
|||||||
24040 | 5' | -52.9 | NC_005262.1 | + | 58256 | 0.66 | 0.843798 |
Target: 5'- -aGGCUGGCGGgAuuccCCAGCcuGACCGCu -3' miRNA: 3'- caCUGGCUGUUgUu---GGUCGu-CUGGUG- -5' |
|||||||
24040 | 5' | -52.9 | NC_005262.1 | + | 348 | 0.66 | 0.841143 |
Target: 5'- aGUGACCGGCuccggcugcuggguGGCGaggaugucaGCgAGCAGcCCGCg -3' miRNA: 3'- -CACUGGCUG--------------UUGU---------UGgUCGUCuGGUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home