miRNA display CGI


Results 21 - 40 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24040 5' -52.9 NC_005262.1 + 51372 0.66 0.83487
Target:  5'- --cGCCGuccGCGAC-GCCGGCcaAGGCCGCg -3'
miRNA:   3'- cacUGGC---UGUUGuUGGUCG--UCUGGUG- -5'
24040 5' -52.9 NC_005262.1 + 41261 0.66 0.83487
Target:  5'- cUGA-CGGCGGCGAUCAcGCAGauucgGCCGCg -3'
miRNA:   3'- cACUgGCUGUUGUUGGU-CGUC-----UGGUG- -5'
24040 5' -52.9 NC_005262.1 + 47148 0.66 0.83487
Target:  5'- -aGGUCGAC-GCGACCGGCgAGGCgCGCa -3'
miRNA:   3'- caCUGGCUGuUGUUGGUCG-UCUG-GUG- -5'
24040 5' -52.9 NC_005262.1 + 59126 0.66 0.83487
Target:  5'- --cGCCGAgGcgAACCGGCcGGGCCGCg -3'
miRNA:   3'- cacUGGCUgUugUUGGUCG-UCUGGUG- -5'
24040 5' -52.9 NC_005262.1 + 32017 0.66 0.833964
Target:  5'- -aGGCCGugGAaaaGGCCGcgaugauGCAGGCCGa -3'
miRNA:   3'- caCUGGCugUUg--UUGGU-------CGUCUGGUg -5'
24040 5' -52.9 NC_005262.1 + 25835 0.66 0.825721
Target:  5'- -gGGCCGugAGCGGCUuGCcGGCCuGCg -3'
miRNA:   3'- caCUGGCugUUGUUGGuCGuCUGG-UG- -5'
24040 5' -52.9 NC_005262.1 + 60473 0.66 0.825721
Target:  5'- --cGCCGACGaucuuGCGGCCGGC-GACCu- -3'
miRNA:   3'- cacUGGCUGU-----UGUUGGUCGuCUGGug -5'
24040 5' -52.9 NC_005262.1 + 15225 0.66 0.825721
Target:  5'- --cACCGAguACGugaAGCAGGCCGCa -3'
miRNA:   3'- cacUGGCUguUGUuggUCGUCUGGUG- -5'
24040 5' -52.9 NC_005262.1 + 33902 0.66 0.825721
Target:  5'- -cGGCCGGCGGCccGAUCGGUAG-CgGCg -3'
miRNA:   3'- caCUGGCUGUUG--UUGGUCGUCuGgUG- -5'
24040 5' -52.9 NC_005262.1 + 58952 0.66 0.825721
Target:  5'- -cGGCgCG-CAGCAgucgaACCAGCcGGCCGCc -3'
miRNA:   3'- caCUG-GCuGUUGU-----UGGUCGuCUGGUG- -5'
24040 5' -52.9 NC_005262.1 + 49452 0.67 0.82013
Target:  5'- cGUGACCGagaaggucagcaagaGCAcgcugaagcgcGCAuucuCCGGCGGugCGCg -3'
miRNA:   3'- -CACUGGC---------------UGU-----------UGUu---GGUCGUCugGUG- -5'
24040 5' -52.9 NC_005262.1 + 41347 0.67 0.816362
Target:  5'- -cGGCCccgGAUGGCAGCUcGCGGACgGCa -3'
miRNA:   3'- caCUGG---CUGUUGUUGGuCGUCUGgUG- -5'
24040 5' -52.9 NC_005262.1 + 63515 0.67 0.816362
Target:  5'- cGUGGCCGucuCAGCAGCggcacuCAGCGcGugUACg -3'
miRNA:   3'- -CACUGGCu--GUUGUUG------GUCGU-CugGUG- -5'
24040 5' -52.9 NC_005262.1 + 51184 0.67 0.816362
Target:  5'- --aGCCGACGACG--CGGCGGcCCGCu -3'
miRNA:   3'- cacUGGCUGUUGUugGUCGUCuGGUG- -5'
24040 5' -52.9 NC_005262.1 + 50648 0.67 0.816362
Target:  5'- --cGCCGAgCAGCAACCGGCu--CCAg -3'
miRNA:   3'- cacUGGCU-GUUGUUGGUCGucuGGUg -5'
24040 5' -52.9 NC_005262.1 + 12916 0.67 0.816362
Target:  5'- cUGGaCGACGACAACCuGCGcGGCgCGCu -3'
miRNA:   3'- cACUgGCUGUUGUUGGuCGU-CUG-GUG- -5'
24040 5' -52.9 NC_005262.1 + 36846 0.67 0.810651
Target:  5'- gGUG-CCGACGACAcgaCGGCGGuucagaaugcagugaACCACu -3'
miRNA:   3'- -CACuGGCUGUUGUug-GUCGUC---------------UGGUG- -5'
24040 5' -52.9 NC_005262.1 + 52517 0.67 0.806804
Target:  5'- aUGGCCGAgAAguCGGCCgAGgAGAUCGCg -3'
miRNA:   3'- cACUGGCUgUU--GUUGG-UCgUCUGGUG- -5'
24040 5' -52.9 NC_005262.1 + 33561 0.67 0.806804
Target:  5'- cGUGcUCGACGAgcucgaGGCCGGCgAGAUCACg -3'
miRNA:   3'- -CACuGGCUGUUg-----UUGGUCG-UCUGGUG- -5'
24040 5' -52.9 NC_005262.1 + 23834 0.67 0.806804
Target:  5'- ---cUCGGCAACGuagGCCGGCAcGCCGCc -3'
miRNA:   3'- cacuGGCUGUUGU---UGGUCGUcUGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.