miRNA display CGI


Results 41 - 60 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24040 5' -52.9 NC_005262.1 + 49589 0.67 0.806804
Target:  5'- -aGGCCGACAAgAAUguGUcgcucGGCCGCg -3'
miRNA:   3'- caCUGGCUGUUgUUGguCGu----CUGGUG- -5'
24040 5' -52.9 NC_005262.1 + 33561 0.67 0.806804
Target:  5'- cGUGcUCGACGAgcucgaGGCCGGCgAGAUCACg -3'
miRNA:   3'- -CACuGGCUGUUg-----UUGGUCG-UCUGGUG- -5'
24040 5' -52.9 NC_005262.1 + 52517 0.67 0.806804
Target:  5'- aUGGCCGAgAAguCGGCCgAGgAGAUCGCg -3'
miRNA:   3'- cACUGGCUgUU--GUUGG-UCgUCUGGUG- -5'
24040 5' -52.9 NC_005262.1 + 55928 0.67 0.803899
Target:  5'- -cGACCGuccggcgaucgaggGCGGCGGCCGuCAGAUCAUg -3'
miRNA:   3'- caCUGGC--------------UGUUGUUGGUcGUCUGGUG- -5'
24040 5' -52.9 NC_005262.1 + 6399 0.67 0.797057
Target:  5'- --cGCCGACGagagGCGGCCGGC-GAgCGCa -3'
miRNA:   3'- cacUGGCUGU----UGUUGGUCGuCUgGUG- -5'
24040 5' -52.9 NC_005262.1 + 42377 0.67 0.797057
Target:  5'- gGUGaACUGGCAG--GCCGGaCAGACCGu -3'
miRNA:   3'- -CAC-UGGCUGUUguUGGUC-GUCUGGUg -5'
24040 5' -52.9 NC_005262.1 + 42965 0.67 0.796072
Target:  5'- aUGACgCG-CAACGACUGGCugaaaaccgcgccGGGCCGCu -3'
miRNA:   3'- cACUG-GCuGUUGUUGGUCG-------------UCUGGUG- -5'
24040 5' -52.9 NC_005262.1 + 29307 0.67 0.787131
Target:  5'- --cGCCGugAACGGCCAGaaAGACC-Cg -3'
miRNA:   3'- cacUGGCugUUGUUGGUCg-UCUGGuG- -5'
24040 5' -52.9 NC_005262.1 + 45100 0.67 0.787131
Target:  5'- uUGACCGcGCu-CAACuCGGCGGguGCCGCg -3'
miRNA:   3'- cACUGGC-UGuuGUUG-GUCGUC--UGGUG- -5'
24040 5' -52.9 NC_005262.1 + 27506 0.67 0.787131
Target:  5'- -cGACaaaGACAGCAcCCAGCucguGcCCGCg -3'
miRNA:   3'- caCUGg--CUGUUGUuGGUCGu---CuGGUG- -5'
24040 5' -52.9 NC_005262.1 + 47013 0.67 0.787131
Target:  5'- -aGAUgGGCGACAucgaggGCgCAGCcGACCACu -3'
miRNA:   3'- caCUGgCUGUUGU------UG-GUCGuCUGGUG- -5'
24040 5' -52.9 NC_005262.1 + 46804 0.67 0.787131
Target:  5'- --aGCCGAUGAcCGACguGCAGGCCcGCg -3'
miRNA:   3'- cacUGGCUGUU-GUUGguCGUCUGG-UG- -5'
24040 5' -52.9 NC_005262.1 + 1568 0.67 0.787131
Target:  5'- aUGcAgCGGCAGC-GCCGGCAGACgaGCg -3'
miRNA:   3'- cAC-UgGCUGUUGuUGGUCGUCUGg-UG- -5'
24040 5' -52.9 NC_005262.1 + 49860 0.67 0.787131
Target:  5'- -cGGCgCGGCAGCGGCCGgagccucgggcGCGGgcGCCGCc -3'
miRNA:   3'- caCUG-GCUGUUGUUGGU-----------CGUC--UGGUG- -5'
24040 5' -52.9 NC_005262.1 + 56898 0.67 0.78613
Target:  5'- --aGCgCGACAACAcgcucGCCGGCgagaucaAGGCCGCg -3'
miRNA:   3'- cacUG-GCUGUUGU-----UGGUCG-------UCUGGUG- -5'
24040 5' -52.9 NC_005262.1 + 15345 0.67 0.77704
Target:  5'- -cGACCagucGCAGCCcGCGGACUACg -3'
miRNA:   3'- caCUGGcuguUGUUGGuCGUCUGGUG- -5'
24040 5' -52.9 NC_005262.1 + 35628 0.67 0.77704
Target:  5'- -cGuCCGGCAACGGCacgCGGCGGGCgAUg -3'
miRNA:   3'- caCuGGCUGUUGUUG---GUCGUCUGgUG- -5'
24040 5' -52.9 NC_005262.1 + 43838 0.67 0.77704
Target:  5'- -gGGCCGGCcGC-GCgCGGCGGugCGCc -3'
miRNA:   3'- caCUGGCUGuUGuUG-GUCGUCugGUG- -5'
24040 5' -52.9 NC_005262.1 + 49333 0.68 0.766793
Target:  5'- aUGACCGACgAGCAGgC-GCGcGCCGCg -3'
miRNA:   3'- cACUGGCUG-UUGUUgGuCGUcUGGUG- -5'
24040 5' -52.9 NC_005262.1 + 17931 0.68 0.766793
Target:  5'- --cGCCGACGccaACGGCgAGCAGGUCGCg -3'
miRNA:   3'- cacUGGCUGU---UGUUGgUCGUCUGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.