miRNA display CGI


Results 1 - 20 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24040 5' -52.9 NC_005262.1 + 120 0.69 0.658442
Target:  5'- -cGGCCGGCGAcCGACCuccauAGCAGAaaGCg -3'
miRNA:   3'- caCUGGCUGUU-GUUGG-----UCGUCUggUG- -5'
24040 5' -52.9 NC_005262.1 + 348 0.66 0.841143
Target:  5'- aGUGACCGGCuccggcugcuggguGGCGaggaugucaGCgAGCAGcCCGCg -3'
miRNA:   3'- -CACUGGCUG--------------UUGU---------UGgUCGUCuGGUG- -5'
24040 5' -52.9 NC_005262.1 + 891 0.7 0.634982
Target:  5'- -cGAUCGACGACAACguGaCAGugcugccggucaaGCCACg -3'
miRNA:   3'- caCUGGCUGUUGUUGguC-GUC-------------UGGUG- -5'
24040 5' -52.9 NC_005262.1 + 1568 0.67 0.787131
Target:  5'- aUGcAgCGGCAGC-GCCGGCAGACgaGCg -3'
miRNA:   3'- cAC-UgGCUGUUGuUGGUCGUCUGg-UG- -5'
24040 5' -52.9 NC_005262.1 + 2251 0.66 0.860958
Target:  5'- -cGuCCGACAAUAGCCGcgcugaugcGCuGACCGa -3'
miRNA:   3'- caCuGGCUGUUGUUGGU---------CGuCUGGUg -5'
24040 5' -52.9 NC_005262.1 + 2866 0.66 0.843798
Target:  5'- cUGAUCGACGACaaggAugCGGCAcccGCCGCc -3'
miRNA:   3'- cACUGGCUGUUG----UugGUCGUc--UGGUG- -5'
24040 5' -52.9 NC_005262.1 + 3772 0.73 0.473098
Target:  5'- --cGCCGGCAucaccgucgucACGGCCAGCGacGGCCGCg -3'
miRNA:   3'- cacUGGCUGU-----------UGUUGGUCGU--CUGGUG- -5'
24040 5' -52.9 NC_005262.1 + 5045 0.71 0.591452
Target:  5'- -cGGCCGGCGccugauCGGCgGGCAGGCCcGCg -3'
miRNA:   3'- caCUGGCUGUu-----GUUGgUCGUCUGG-UG- -5'
24040 5' -52.9 NC_005262.1 + 5177 0.73 0.4498
Target:  5'- -cGGCCGGCGucgcgggcgcgggcGCGGCCGGCGcGACCGa -3'
miRNA:   3'- caCUGGCUGU--------------UGUUGGUCGU-CUGGUg -5'
24040 5' -52.9 NC_005262.1 + 5504 0.66 0.852497
Target:  5'- -aGGCCG-CGACGACCGGaccgGGAUCGu -3'
miRNA:   3'- caCUGGCuGUUGUUGGUCg---UCUGGUg -5'
24040 5' -52.9 NC_005262.1 + 6399 0.67 0.797057
Target:  5'- --cGCCGACGagagGCGGCCGGC-GAgCGCa -3'
miRNA:   3'- cacUGGCUGU----UGUUGGUCGuCUgGUG- -5'
24040 5' -52.9 NC_005262.1 + 10089 0.69 0.66958
Target:  5'- uUGAucUCGGCGACAucgcuuGCCAGCAGGCUc- -3'
miRNA:   3'- cACU--GGCUGUUGU------UGGUCGUCUGGug -5'
24040 5' -52.9 NC_005262.1 + 10488 0.72 0.536492
Target:  5'- -cGACCaGCAGCAgcGCCAGCAuggcGGCCAg -3'
miRNA:   3'- caCUGGcUGUUGU--UGGUCGU----CUGGUg -5'
24040 5' -52.9 NC_005262.1 + 10556 0.7 0.602584
Target:  5'- -cGACCGGCcgcgcGCAGCC-GCAGcguACCGCg -3'
miRNA:   3'- caCUGGCUGu----UGUUGGuCGUC---UGGUG- -5'
24040 5' -52.9 NC_005262.1 + 10889 0.73 0.432993
Target:  5'- cGUGAUCGucGCGGCAGCucgcgCAGCAGuACCGCg -3'
miRNA:   3'- -CACUGGC--UGUUGUUG-----GUCGUC-UGGUG- -5'
24040 5' -52.9 NC_005262.1 + 11179 0.66 0.843798
Target:  5'- ---cCCGcCAAgcguGCCAGCGGGCCGCc -3'
miRNA:   3'- cacuGGCuGUUgu--UGGUCGUCUGGUG- -5'
24040 5' -52.9 NC_005262.1 + 11581 0.7 0.60147
Target:  5'- --uGCCGGCGGCGGCCAGCGcucGAgcgacuuCCACa -3'
miRNA:   3'- cacUGGCUGUUGUUGGUCGU---CU-------GGUG- -5'
24040 5' -52.9 NC_005262.1 + 11963 0.69 0.691737
Target:  5'- -gGAUCGACGGCGAugcgugaucgUCAGCAcGACCAg -3'
miRNA:   3'- caCUGGCUGUUGUU----------GGUCGU-CUGGUg -5'
24040 5' -52.9 NC_005262.1 + 12310 0.71 0.558302
Target:  5'- cGUGuuCGACGGCAugCGGCucguGCCGCa -3'
miRNA:   3'- -CACugGCUGUUGUugGUCGuc--UGGUG- -5'
24040 5' -52.9 NC_005262.1 + 12661 0.68 0.723418
Target:  5'- --cGCCGGCGGCAG-CAGCAGcucgacgagcgccGCCGCg -3'
miRNA:   3'- cacUGGCUGUUGUUgGUCGUC-------------UGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.