miRNA display CGI


Results 21 - 40 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24040 5' -52.9 NC_005262.1 + 12816 0.7 0.634982
Target:  5'- cUGACCGAUGACGcggugcuCCGGCGGGacgccauCCACg -3'
miRNA:   3'- cACUGGCUGUUGUu------GGUCGUCU-------GGUG- -5'
24040 5' -52.9 NC_005262.1 + 12916 0.67 0.816362
Target:  5'- cUGGaCGACGACAACCuGCGcGGCgCGCu -3'
miRNA:   3'- cACUgGCUGUUGUUGGuCGU-CUG-GUG- -5'
24040 5' -52.9 NC_005262.1 + 14521 0.7 0.602584
Target:  5'- -cGAUCGGCAACAGCaUGGCAGuGCCGu -3'
miRNA:   3'- caCUGGCUGUUGUUG-GUCGUC-UGGUg -5'
24040 5' -52.9 NC_005262.1 + 14924 0.68 0.735244
Target:  5'- -cGACCGuaauCAGCuuucuAUCGGCAaGGCCGCu -3'
miRNA:   3'- caCUGGCu---GUUGu----UGGUCGU-CUGGUG- -5'
24040 5' -52.9 NC_005262.1 + 15225 0.66 0.825721
Target:  5'- --cACCGAguACGugaAGCAGGCCGCa -3'
miRNA:   3'- cacUGGCUguUGUuggUCGUCUGGUG- -5'
24040 5' -52.9 NC_005262.1 + 15345 0.67 0.77704
Target:  5'- -cGACCagucGCAGCCcGCGGACUACg -3'
miRNA:   3'- caCUGGcuguUGUUGGuCGUCUGGUG- -5'
24040 5' -52.9 NC_005262.1 + 15364 0.71 0.577034
Target:  5'- -cGACUGGCAGCAuCCAugccgcgucgaaguGCAGGCCGg -3'
miRNA:   3'- caCUGGCUGUUGUuGGU--------------CGUCUGGUg -5'
24040 5' -52.9 NC_005262.1 + 17075 0.69 0.680682
Target:  5'- --cGCCGAUAGgcgcgcccguCGACgCGGCGGGCCGCg -3'
miRNA:   3'- cacUGGCUGUU----------GUUG-GUCGUCUGGUG- -5'
24040 5' -52.9 NC_005262.1 + 17467 0.66 0.851637
Target:  5'- -cGGCCGcCGAguCGACCGGCAgguucuuGAUCGCg -3'
miRNA:   3'- caCUGGCuGUU--GUUGGUCGU-------CUGGUG- -5'
24040 5' -52.9 NC_005262.1 + 17855 0.71 0.547363
Target:  5'- -cGGCCGuCGACAGCUacgaGGUcGACCACg -3'
miRNA:   3'- caCUGGCuGUUGUUGG----UCGuCUGGUG- -5'
24040 5' -52.9 NC_005262.1 + 17931 0.68 0.766793
Target:  5'- --cGCCGACGccaACGGCgAGCAGGUCGCg -3'
miRNA:   3'- cacUGGCUGU---UGUUGgUCGUCUGGUG- -5'
24040 5' -52.9 NC_005262.1 + 18107 0.68 0.713656
Target:  5'- cGUGACCauuuCGACAGucucgucgggcCCGGCAG-CCACg -3'
miRNA:   3'- -CACUGGcu--GUUGUU-----------GGUCGUCuGGUG- -5'
24040 5' -52.9 NC_005262.1 + 18990 0.77 0.279846
Target:  5'- uUG-UCGACAACGACCGGCAGcCCAg -3'
miRNA:   3'- cACuGGCUGUUGUUGGUCGUCuGGUg -5'
24040 5' -52.9 NC_005262.1 + 19342 0.66 0.851637
Target:  5'- cUGGCCGGCGACuacaucGACCGccugaacGCGGAgUACa -3'
miRNA:   3'- cACUGGCUGUUG------UUGGU-------CGUCUgGUG- -5'
24040 5' -52.9 NC_005262.1 + 19880 0.66 0.852497
Target:  5'- -cGACCGcccgauguGCGACGACCAcGCGcacgagauuGGCCAUg -3'
miRNA:   3'- caCUGGC--------UGUUGUUGGU-CGU---------CUGGUG- -5'
24040 5' -52.9 NC_005262.1 + 20170 0.68 0.735244
Target:  5'- -cGA-CGGCGGCAACCAGCGcGAcaucaccauCCACg -3'
miRNA:   3'- caCUgGCUGUUGUUGGUCGU-CU---------GGUG- -5'
24040 5' -52.9 NC_005262.1 + 20736 0.73 0.442836
Target:  5'- uGUGaggaGCCGGCAGCGGCCGGCAaGAugguuUCACg -3'
miRNA:   3'- -CAC----UGGCUGUUGUUGGUCGU-CU-----GGUG- -5'
24040 5' -52.9 NC_005262.1 + 22126 0.69 0.691737
Target:  5'- cGUGGCCGGCAAUcgucuGGCCGccGCGGcugcCCGCa -3'
miRNA:   3'- -CACUGGCUGUUG-----UUGGU--CGUCu---GGUG- -5'
24040 5' -52.9 NC_005262.1 + 22199 0.68 0.724497
Target:  5'- --uGCCGGCcACGugCAGCAggucgacguuGACCGCg -3'
miRNA:   3'- cacUGGCUGuUGUugGUCGU----------CUGGUG- -5'
24040 5' -52.9 NC_005262.1 + 23788 0.68 0.756404
Target:  5'- cGUGGUCGACcguGC-GCCGGUAGACcCACa -3'
miRNA:   3'- -CACUGGCUGu--UGuUGGUCGUCUG-GUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.