miRNA display CGI


Results 1 - 20 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24040 5' -52.9 NC_005262.1 + 63515 0.67 0.816362
Target:  5'- cGUGGCCGucuCAGCAGCggcacuCAGCGcGugUACg -3'
miRNA:   3'- -CACUGGCu--GUUGUUG------GUCGU-CugGUG- -5'
24040 5' -52.9 NC_005262.1 + 63359 0.69 0.66958
Target:  5'- -cGGCCGucaAGCAGgCGGCGGcuGCCACg -3'
miRNA:   3'- caCUGGCug-UUGUUgGUCGUC--UGGUG- -5'
24040 5' -52.9 NC_005262.1 + 62607 0.73 0.442836
Target:  5'- -aGGCCGGCGAUuuucGCCAGCAGGaCGCc -3'
miRNA:   3'- caCUGGCUGUUGu---UGGUCGUCUgGUG- -5'
24040 5' -52.9 NC_005262.1 + 60473 0.66 0.825721
Target:  5'- --cGCCGACGaucuuGCGGCCGGC-GACCu- -3'
miRNA:   3'- cacUGGCUGU-----UGUUGGUCGuCUGGug -5'
24040 5' -52.9 NC_005262.1 + 60184 0.69 0.690634
Target:  5'- -cGGCCagugGGCGGCAACCGGCAaggagccGGCCGg -3'
miRNA:   3'- caCUGG----CUGUUGUUGGUCGU-------CUGGUg -5'
24040 5' -52.9 NC_005262.1 + 59679 0.68 0.745883
Target:  5'- cGUGaAUUGugGACGAUCGGCGuGCCGCc -3'
miRNA:   3'- -CAC-UGGCugUUGUUGGUCGUcUGGUG- -5'
24040 5' -52.9 NC_005262.1 + 59126 0.66 0.83487
Target:  5'- --cGCCGAgGcgAACCGGCcGGGCCGCg -3'
miRNA:   3'- cacUGGCUgUugUUGGUCG-UCUGGUG- -5'
24040 5' -52.9 NC_005262.1 + 59053 0.71 0.580355
Target:  5'- -aGGCCGcCGGCGGCCGGCugguucGACUGCu -3'
miRNA:   3'- caCUGGCuGUUGUUGGUCGu-----CUGGUG- -5'
24040 5' -52.9 NC_005262.1 + 58952 0.66 0.825721
Target:  5'- -cGGCgCG-CAGCAgucgaACCAGCcGGCCGCc -3'
miRNA:   3'- caCUG-GCuGUUGU-----UGGUCGuCUGGUG- -5'
24040 5' -52.9 NC_005262.1 + 58906 0.66 0.859285
Target:  5'- --cGCCG-CAGCAGCCAGCcuucacggcgccGAUCACg -3'
miRNA:   3'- cacUGGCuGUUGUUGGUCGu-----------CUGGUG- -5'
24040 5' -52.9 NC_005262.1 + 58856 0.7 0.6361
Target:  5'- -aGAUCGGCGACGucacGCCGGCgcAGcCCGCg -3'
miRNA:   3'- caCUGGCUGUUGU----UGGUCG--UCuGGUG- -5'
24040 5' -52.9 NC_005262.1 + 58508 0.68 0.756404
Target:  5'- uUGACgGGCAgggacGCGGCCGugucguGCAGcACCACa -3'
miRNA:   3'- cACUGgCUGU-----UGUUGGU------CGUC-UGGUG- -5'
24040 5' -52.9 NC_005262.1 + 58256 0.66 0.843798
Target:  5'- -aGGCUGGCGGgAuuccCCAGCcuGACCGCu -3'
miRNA:   3'- caCUGGCUGUUgUu---GGUCGu-CUGGUG- -5'
24040 5' -52.9 NC_005262.1 + 57855 0.66 0.857602
Target:  5'- -aGAUCGACGGCAAgcuauacgccguguCCAGCuccugcgucgugaAGAUCGCg -3'
miRNA:   3'- caCUGGCUGUUGUU--------------GGUCG-------------UCUGGUG- -5'
24040 5' -52.9 NC_005262.1 + 57426 0.73 0.432993
Target:  5'- -cGGCCGACAACGcuCCGGCAccGuCCGCg -3'
miRNA:   3'- caCUGGCUGUUGUu-GGUCGU--CuGGUG- -5'
24040 5' -52.9 NC_005262.1 + 57047 0.68 0.735244
Target:  5'- cUGGCCGGCAAgGaggcugauaccGCCgAGCAGAUCGg -3'
miRNA:   3'- cACUGGCUGUUgU-----------UGG-UCGUCUGGUg -5'
24040 5' -52.9 NC_005262.1 + 56898 0.67 0.78613
Target:  5'- --aGCgCGACAACAcgcucGCCGGCgagaucaAGGCCGCg -3'
miRNA:   3'- cacUG-GCUGUUGU-----UGGUCG-------UCUGGUG- -5'
24040 5' -52.9 NC_005262.1 + 55928 0.67 0.803899
Target:  5'- -cGACCGuccggcgaucgaggGCGGCGGCCGuCAGAUCAUg -3'
miRNA:   3'- caCUGGC--------------UGUUGUUGGUcGUCUGGUG- -5'
24040 5' -52.9 NC_005262.1 + 55743 0.75 0.359116
Target:  5'- cGUGACCGGCGu--GCCGGaCGcGGCCACg -3'
miRNA:   3'- -CACUGGCUGUuguUGGUC-GU-CUGGUG- -5'
24040 5' -52.9 NC_005262.1 + 53844 0.68 0.745883
Target:  5'- -cGGCgCGGCGcggACGGCaAGCAGAUCGCg -3'
miRNA:   3'- caCUG-GCUGU---UGUUGgUCGUCUGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.