miRNA display CGI


Results 1 - 20 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24040 5' -52.9 NC_005262.1 + 26015 0.7 0.602584
Target:  5'- -cGACCGAgGGCAcguacuacgcCCAGCAGcucGCCGCg -3'
miRNA:   3'- caCUGGCUgUUGUu---------GGUCGUC---UGGUG- -5'
24040 5' -52.9 NC_005262.1 + 12310 0.71 0.558302
Target:  5'- cGUGuuCGACGGCAugCGGCucguGCCGCa -3'
miRNA:   3'- -CACugGCUGUUGUugGUCGuc--UGGUG- -5'
24040 5' -52.9 NC_005262.1 + 32956 0.71 0.580355
Target:  5'- -cGACCGGCAACcaccguucGAUCGGCgugaAGAUCACg -3'
miRNA:   3'- caCUGGCUGUUG--------UUGGUCG----UCUGGUG- -5'
24040 5' -52.9 NC_005262.1 + 48351 0.71 0.581463
Target:  5'- -cGACCGACccggcgcugcuGGCGGCCGGCuaucagucggguuacGACCGCg -3'
miRNA:   3'- caCUGGCUG-----------UUGUUGGUCGu--------------CUGGUG- -5'
24040 5' -52.9 NC_005262.1 + 49910 0.71 0.591452
Target:  5'- -cGG-CGACGACGGgCAGCAGuACCGCc -3'
miRNA:   3'- caCUgGCUGUUGUUgGUCGUC-UGGUG- -5'
24040 5' -52.9 NC_005262.1 + 5045 0.71 0.591452
Target:  5'- -cGGCCGGCGccugauCGGCgGGCAGGCCcGCg -3'
miRNA:   3'- caCUGGCUGUu-----GUUGgUCGUCUGG-UG- -5'
24040 5' -52.9 NC_005262.1 + 11581 0.7 0.60147
Target:  5'- --uGCCGGCGGCGGCCAGCGcucGAgcgacuuCCACa -3'
miRNA:   3'- cacUGGCUGUUGUUGGUCGU---CU-------GGUG- -5'
24040 5' -52.9 NC_005262.1 + 10556 0.7 0.602584
Target:  5'- -cGACCGGCcgcgcGCAGCC-GCAGcguACCGCg -3'
miRNA:   3'- caCUGGCUGu----UGUUGGuCGUC---UGGUG- -5'
24040 5' -52.9 NC_005262.1 + 14521 0.7 0.602584
Target:  5'- -cGAUCGGCAACAGCaUGGCAGuGCCGu -3'
miRNA:   3'- caCUGGCUGUUGUUG-GUCGUC-UGGUg -5'
24040 5' -52.9 NC_005262.1 + 17855 0.71 0.547363
Target:  5'- -cGGCCGuCGACAGCUacgaGGUcGACCACg -3'
miRNA:   3'- caCUGGCuGUUGUUGG----UCGuCUGGUG- -5'
24040 5' -52.9 NC_005262.1 + 49213 0.72 0.536492
Target:  5'- cUGGCCGAgGGCGGCCucggcggcgcGCAGuCCGCg -3'
miRNA:   3'- cACUGGCUgUUGUUGGu---------CGUCuGGUG- -5'
24040 5' -52.9 NC_005262.1 + 46650 0.72 0.536492
Target:  5'- aUGGCCGACAGCGgcagcauggcGCCGGCAccGAcgcCCGCc -3'
miRNA:   3'- cACUGGCUGUUGU----------UGGUCGU--CU---GGUG- -5'
24040 5' -52.9 NC_005262.1 + 18990 0.77 0.279846
Target:  5'- uUG-UCGACAACGACCGGCAGcCCAg -3'
miRNA:   3'- cACuGGCUGUUGUUGGUCGUCuGGUg -5'
24040 5' -52.9 NC_005262.1 + 26521 0.77 0.279846
Target:  5'- aUGACCGAgccCGACAagACCGGCGG-CCACu -3'
miRNA:   3'- cACUGGCU---GUUGU--UGGUCGUCuGGUG- -5'
24040 5' -52.9 NC_005262.1 + 57426 0.73 0.432993
Target:  5'- -cGGCCGACAACGcuCCGGCAccGuCCGCg -3'
miRNA:   3'- caCUGGCUGUUGUu-GGUCGU--CuGGUG- -5'
24040 5' -52.9 NC_005262.1 + 5177 0.73 0.4498
Target:  5'- -cGGCCGGCGucgcgggcgcgggcGCGGCCGGCGcGACCGa -3'
miRNA:   3'- caCUGGCUGU--------------UGUUGGUCGU-CUGGUg -5'
24040 5' -52.9 NC_005262.1 + 30056 0.73 0.473098
Target:  5'- -aGACCGACGAUgcuGCCGGC-GACgACg -3'
miRNA:   3'- caCUGGCUGUUGu--UGGUCGuCUGgUG- -5'
24040 5' -52.9 NC_005262.1 + 39760 0.73 0.473098
Target:  5'- -gGAUCGACaAGCcGCCAGCcGACCAUc -3'
miRNA:   3'- caCUGGCUG-UUGuUGGUCGuCUGGUG- -5'
24040 5' -52.9 NC_005262.1 + 53367 0.72 0.493839
Target:  5'- cUGAUCGGCGcCAugcGCCugccGCAGACCGCg -3'
miRNA:   3'- cACUGGCUGUuGU---UGGu---CGUCUGGUG- -5'
24040 5' -52.9 NC_005262.1 + 10488 0.72 0.536492
Target:  5'- -cGACCaGCAGCAgcGCCAGCAuggcGGCCAg -3'
miRNA:   3'- caCUGGcUGUUGU--UGGUCGU----CUGGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.