miRNA display CGI


Results 1 - 20 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24040 5' -52.9 NC_005262.1 + 2251 0.66 0.860958
Target:  5'- -cGuCCGACAAUAGCCGcgcugaugcGCuGACCGa -3'
miRNA:   3'- caCuGGCUGUUGUUGGU---------CGuCUGGUg -5'
24040 5' -52.9 NC_005262.1 + 42241 0.68 0.745883
Target:  5'- -cGAUCGGCcGCGACCGGgccCGGcGCCGCg -3'
miRNA:   3'- caCUGGCUGuUGUUGGUC---GUC-UGGUG- -5'
24040 5' -52.9 NC_005262.1 + 14924 0.68 0.735244
Target:  5'- -cGACCGuaauCAGCuuucuAUCGGCAaGGCCGCu -3'
miRNA:   3'- caCUGGCu---GUUGu----UGGUCGU-CUGGUG- -5'
24040 5' -52.9 NC_005262.1 + 33758 0.75 0.333777
Target:  5'- uUGGCCGuguacGCGGCGACCAGCgAGGCgCGCu -3'
miRNA:   3'- cACUGGC-----UGUUGUUGGUCG-UCUG-GUG- -5'
24040 5' -52.9 NC_005262.1 + 17467 0.66 0.851637
Target:  5'- -cGGCCGcCGAguCGACCGGCAgguucuuGAUCGCg -3'
miRNA:   3'- caCUGGCuGUU--GUUGGUCGU-------CUGGUG- -5'
24040 5' -52.9 NC_005262.1 + 19342 0.66 0.851637
Target:  5'- cUGGCCGGCGACuacaucGACCGccugaacGCGGAgUACa -3'
miRNA:   3'- cACUGGCUGUUG------UUGGU-------CGUCUgGUG- -5'
24040 5' -52.9 NC_005262.1 + 2866 0.66 0.843798
Target:  5'- cUGAUCGACGACaaggAugCGGCAcccGCCGCc -3'
miRNA:   3'- cACUGGCUGUUG----UugGUCGUc--UGGUG- -5'
24040 5' -52.9 NC_005262.1 + 60473 0.66 0.825721
Target:  5'- --cGCCGACGaucuuGCGGCCGGC-GACCu- -3'
miRNA:   3'- cacUGGCUGU-----UGUUGGUCGuCUGGug -5'
24040 5' -52.9 NC_005262.1 + 23943 0.67 0.806804
Target:  5'- -gGACgGGCGGC-ACCGGCaaGGGCgGCg -3'
miRNA:   3'- caCUGgCUGUUGuUGGUCG--UCUGgUG- -5'
24040 5' -52.9 NC_005262.1 + 58508 0.68 0.756404
Target:  5'- uUGACgGGCAgggacGCGGCCGugucguGCAGcACCACa -3'
miRNA:   3'- cACUGgCUGU-----UGUUGGU------CGUC-UGGUG- -5'
24040 5' -52.9 NC_005262.1 + 49860 0.67 0.787131
Target:  5'- -cGGCgCGGCAGCGGCCGgagccucgggcGCGGgcGCCGCc -3'
miRNA:   3'- caCUG-GCUGUUGUUGGU-----------CGUC--UGGUG- -5'
24040 5' -52.9 NC_005262.1 + 42155 0.67 0.806804
Target:  5'- cUGGCCGGCGGgAAUCGuGCuGAuCCGCg -3'
miRNA:   3'- cACUGGCUGUUgUUGGU-CGuCU-GGUG- -5'
24040 5' -52.9 NC_005262.1 + 49292 0.66 0.860958
Target:  5'- -aGGCCGcCcuCGGCCAGCAuGCCGg -3'
miRNA:   3'- caCUGGCuGuuGUUGGUCGUcUGGUg -5'
24040 5' -52.9 NC_005262.1 + 1568 0.67 0.787131
Target:  5'- aUGcAgCGGCAGC-GCCGGCAGACgaGCg -3'
miRNA:   3'- cAC-UgGCUGUUGuUGGUCGUCUGg-UG- -5'
24040 5' -52.9 NC_005262.1 + 58906 0.66 0.859285
Target:  5'- --cGCCG-CAGCAGCCAGCcuucacggcgccGAUCACg -3'
miRNA:   3'- cacUGGCuGUUGUUGGUCGu-----------CUGGUG- -5'
24040 5' -52.9 NC_005262.1 + 25835 0.66 0.825721
Target:  5'- -gGGCCGugAGCGGCUuGCcGGCCuGCg -3'
miRNA:   3'- caCUGGCugUUGUUGGuCGuCUGG-UG- -5'
24040 5' -52.9 NC_005262.1 + 23788 0.68 0.756404
Target:  5'- cGUGGUCGACcguGC-GCCGGUAGACcCACa -3'
miRNA:   3'- -CACUGGCUGu--UGuUGGUCGUCUG-GUG- -5'
24040 5' -52.9 NC_005262.1 + 51377 0.68 0.745883
Target:  5'- -cGAgCGGCAugcgcaGCAGCCGGCGG-CCGg -3'
miRNA:   3'- caCUgGCUGU------UGUUGGUCGUCuGGUg -5'
24040 5' -52.9 NC_005262.1 + 19880 0.66 0.852497
Target:  5'- -cGACCGcccgauguGCGACGACCAcGCGcacgagauuGGCCAUg -3'
miRNA:   3'- caCUGGC--------UGUUGUUGGU-CGU---------CUGGUG- -5'
24040 5' -52.9 NC_005262.1 + 11179 0.66 0.843798
Target:  5'- ---cCCGcCAAgcguGCCAGCGGGCCGCc -3'
miRNA:   3'- cacuGGCuGUUgu--UGGUCGUCUGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.