Results 1 - 10 of 10 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 24041 | 3' | -54.7 | NC_005262.1 | + | 31685 | 0.66 | 0.81552 |
|
Target: 5'- aCGGAgaGGUcGAAGGUGauGCgaUCGCCg -3' miRNA: 3'- -GCCUagCCA-CUUCCACacCGa-AGCGG- -5' |
|||||||
| 24041 | 3' | -54.7 | NC_005262.1 | + | 62304 | 0.66 | 0.796767 |
|
Target: 5'- gCGGcUUGGUGuuugccauAGGUGUcuccgGGUUUCGCa -3' miRNA: 3'- -GCCuAGCCACu-------UCCACA-----CCGAAGCGg -5' |
|||||||
| 24041 | 3' | -54.7 | NC_005262.1 | + | 16980 | 0.68 | 0.683982 |
|
Target: 5'- gCGGG-CGGUGc-GGUGUGGUgcgGCCc -3' miRNA: 3'- -GCCUaGCCACuuCCACACCGaagCGG- -5' |
|||||||
| 24041 | 3' | -54.7 | NC_005262.1 | + | 996 | 0.68 | 0.662428 |
|
Target: 5'- gCGGggCGG-GgcGGUGUaGaGCUugUCGCCg -3' miRNA: 3'- -GCCuaGCCaCuuCCACA-C-CGA--AGCGG- -5' |
|||||||
| 24041 | 3' | -54.7 | NC_005262.1 | + | 1916 | 0.69 | 0.640763 |
|
Target: 5'- gCGGAg-GGUGcGGGUugcGUGGC-UCGCUg -3' miRNA: 3'- -GCCUagCCACuUCCA---CACCGaAGCGG- -5' |
|||||||
| 24041 | 3' | -54.7 | NC_005262.1 | + | 40346 | 0.7 | 0.58663 |
|
Target: 5'- uGGAU-GGUGAAGGUGUcauuGCUgcgCGCg -3' miRNA: 3'- gCCUAgCCACUUCCACAc---CGAa--GCGg -5' |
|||||||
| 24041 | 3' | -54.7 | NC_005262.1 | + | 38489 | 0.7 | 0.554523 |
|
Target: 5'- aCGGGcaagUC-GUGAAGGUGUGGCU-CuCCg -3' miRNA: 3'- -GCCU----AGcCACUUCCACACCGAaGcGG- -5' |
|||||||
| 24041 | 3' | -54.7 | NC_005262.1 | + | 36306 | 0.75 | 0.320803 |
|
Target: 5'- uCGGucgacuUCGGUGggGGgccgGUGcGCU-CGCCg -3' miRNA: 3'- -GCCu-----AGCCACuuCCa---CAC-CGAaGCGG- -5' |
|||||||
| 24041 | 3' | -54.7 | NC_005262.1 | + | 41579 | 0.81 | 0.132314 |
|
Target: 5'- cCGGAUCGGUGAcGGUGUGaUUgugCGCCg -3' miRNA: 3'- -GCCUAGCCACUuCCACACcGAa--GCGG- -5' |
|||||||
| 24041 | 3' | -54.7 | NC_005262.1 | + | 34785 | 1.12 | 0.000971 |
|
Target: 5'- gCGGAUCGGUGAAGGUGUGGCUUCGCCu -3' miRNA: 3'- -GCCUAGCCACUUCCACACCGAAGCGG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home