miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24041 5' -58.1 NC_005262.1 + 59325 0.66 0.643927
Target:  5'- gCUGAGcGUGCag--CAGCUCCUCGAg -3'
miRNA:   3'- -GGCUCcUACGgcuaGUCGAGGGGCUg -5'
24041 5' -58.1 NC_005262.1 + 27396 0.66 0.643927
Target:  5'- gUCGuGGAugaugcUGCCGAUCuuGCUCgCCGcGCu -3'
miRNA:   3'- -GGCuCCU------ACGGCUAGu-CGAGgGGC-UG- -5'
24041 5' -58.1 NC_005262.1 + 57071 0.66 0.643927
Target:  5'- gCCGAGcaGAUcGgCGAgaucggCGGCUUCCCGAUc -3'
miRNA:   3'- -GGCUC--CUA-CgGCUa-----GUCGAGGGGCUG- -5'
24041 5' -58.1 NC_005262.1 + 44971 0.66 0.633305
Target:  5'- gCCGAGGcgaggGCCGAcgugCAGCagUCCgCgCGGCa -3'
miRNA:   3'- -GGCUCCua---CGGCUa---GUCG--AGG-G-GCUG- -5'
24041 5' -58.1 NC_005262.1 + 3882 0.66 0.622683
Target:  5'- gUCGAGGAUgGCCG---GGUUCCgaCCGGCu -3'
miRNA:   3'- -GGCUCCUA-CGGCuagUCGAGG--GGCUG- -5'
24041 5' -58.1 NC_005262.1 + 10985 0.66 0.612068
Target:  5'- gCCG-GGAacGCCGGUCGcGCUCgCaCGGCu -3'
miRNA:   3'- -GGCuCCUa-CGGCUAGU-CGAGgG-GCUG- -5'
24041 5' -58.1 NC_005262.1 + 10526 0.66 0.612068
Target:  5'- gCGGGGGcgGCCGAaaCGGCUaUgCCGACg -3'
miRNA:   3'- gGCUCCUa-CGGCUa-GUCGA-GgGGCUG- -5'
24041 5' -58.1 NC_005262.1 + 57203 0.66 0.601469
Target:  5'- cUCGAcccGGAccUGCCGGUCGGCggcaUCgCGACg -3'
miRNA:   3'- -GGCU---CCU--ACGGCUAGUCGa---GGgGCUG- -5'
24041 5' -58.1 NC_005262.1 + 57138 0.66 0.590895
Target:  5'- gCGAGuacaucGcgGCCGuGUCGGUcgacaUCCCCGGCg -3'
miRNA:   3'- gGCUC------CuaCGGC-UAGUCG-----AGGGGCUG- -5'
24041 5' -58.1 NC_005262.1 + 17915 0.67 0.580354
Target:  5'- gCGAGcc-GCCGAUCGGCg--CCGACg -3'
miRNA:   3'- gGCUCcuaCGGCUAGUCGaggGGCUG- -5'
24041 5' -58.1 NC_005262.1 + 12525 0.67 0.559397
Target:  5'- aCGAGGAUcgugcGCCGcAUCGGCUCggcuaccguCUCGAUc -3'
miRNA:   3'- gGCUCCUA-----CGGC-UAGUCGAG---------GGGCUG- -5'
24041 5' -58.1 NC_005262.1 + 9132 0.67 0.548997
Target:  5'- aUGAGGAccggcgccggGCCGGUCGGaaugcggaUCaCCCGGCg -3'
miRNA:   3'- gGCUCCUa---------CGGCUAGUCg-------AG-GGGCUG- -5'
24041 5' -58.1 NC_005262.1 + 7780 0.67 0.548997
Target:  5'- cUCGAGGAgGCgGcgCAGCUCUCacaGAUc -3'
miRNA:   3'- -GGCUCCUaCGgCuaGUCGAGGGg--CUG- -5'
24041 5' -58.1 NC_005262.1 + 53133 0.67 0.548997
Target:  5'- aCCGc-GAUGCCGcgCgAGUUCUUCGACg -3'
miRNA:   3'- -GGCucCUACGGCuaG-UCGAGGGGCUG- -5'
24041 5' -58.1 NC_005262.1 + 35216 0.67 0.53146
Target:  5'- uCCGcaAGGAUGCggaggucggcggcgCGAUCGGCagcggcugggcgcCCCCGGCg -3'
miRNA:   3'- -GGC--UCCUACG--------------GCUAGUCGa------------GGGGCUG- -5'
24041 5' -58.1 NC_005262.1 + 5771 0.67 0.528386
Target:  5'- aUCGAGGAaugggUGCCGAUggugCAGUaccUCCCGAUg -3'
miRNA:   3'- -GGCUCCU-----ACGGCUA----GUCGa--GGGGCUG- -5'
24041 5' -58.1 NC_005262.1 + 51820 0.68 0.518188
Target:  5'- gCCGAGcugGUCGAUCAGCUCC--GGCu -3'
miRNA:   3'- -GGCUCcuaCGGCUAGUCGAGGggCUG- -5'
24041 5' -58.1 NC_005262.1 + 38166 0.68 0.498034
Target:  5'- aCUGGuGGAUGCCGGUCAGggCaCCGGu -3'
miRNA:   3'- -GGCU-CCUACGGCUAGUCgaGgGGCUg -5'
24041 5' -58.1 NC_005262.1 + 36319 0.68 0.498034
Target:  5'- gUGGGGG-GCCGGUgcGCUCgCCGGCa -3'
miRNA:   3'- gGCUCCUaCGGCUAguCGAGgGGCUG- -5'
24041 5' -58.1 NC_005262.1 + 42690 0.68 0.498034
Target:  5'- gCGAGauaagGCCGGUCAGgUCgUCCGGCg -3'
miRNA:   3'- gGCUCcua--CGGCUAGUCgAG-GGGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.