miRNA display CGI


Results 21 - 33 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24041 5' -58.1 NC_005262.1 + 12385 0.68 0.498034
Target:  5'- gCCGucGAacacguUGCCGAgaaagcUCGGCUCgCCGGCc -3'
miRNA:   3'- -GGCucCU------ACGGCU------AGUCGAGgGGCUG- -5'
24041 5' -58.1 NC_005262.1 + 15723 0.69 0.468487
Target:  5'- -gGGGGAUGcCCGAcgcguUCAGCcgcgCCUCGAUg -3'
miRNA:   3'- ggCUCCUAC-GGCU-----AGUCGa---GGGGCUG- -5'
24041 5' -58.1 NC_005262.1 + 40532 0.69 0.458838
Target:  5'- gCCG-GGAUGUCGGUgaUAGC-CCCCGuCc -3'
miRNA:   3'- -GGCuCCUACGGCUA--GUCGaGGGGCuG- -5'
24041 5' -58.1 NC_005262.1 + 51215 0.69 0.439865
Target:  5'- gCGGGcGAUGCUGAUCgcaccgGGCUCCucaugcgcgCCGGCu -3'
miRNA:   3'- gGCUC-CUACGGCUAG------UCGAGG---------GGCUG- -5'
24041 5' -58.1 NC_005262.1 + 2590 0.69 0.438928
Target:  5'- gCCGGcggcccuucaugcGGGUGUCGuagucCAGCUCCUCGAUa -3'
miRNA:   3'- -GGCU-------------CCUACGGCua---GUCGAGGGGCUG- -5'
24041 5' -58.1 NC_005262.1 + 52702 0.69 0.430547
Target:  5'- aCGAGccGGUGCgcuUCAGCUCgCCCGGCu -3'
miRNA:   3'- gGCUC--CUACGgcuAGUCGAG-GGGCUG- -5'
24041 5' -58.1 NC_005262.1 + 59299 0.7 0.412265
Target:  5'- aCGAGGAcaUGCCGGaCGGCggCUCgGGCa -3'
miRNA:   3'- gGCUCCU--ACGGCUaGUCGa-GGGgCUG- -5'
24041 5' -58.1 NC_005262.1 + 45335 0.7 0.377182
Target:  5'- uCCGAGGuUGCCGGUC-GCcgagUUgCCGGCg -3'
miRNA:   3'- -GGCUCCuACGGCUAGuCG----AGgGGCUG- -5'
24041 5' -58.1 NC_005262.1 + 5932 0.71 0.36041
Target:  5'- aCGcGGAUGCCGcgguUCAGCUUCUCG-Cg -3'
miRNA:   3'- gGCuCCUACGGCu---AGUCGAGGGGCuG- -5'
24041 5' -58.1 NC_005262.1 + 35333 0.72 0.31328
Target:  5'- gCCGGGGGcgcccagccgcUGCCGAUC-GCgCCgCCGACc -3'
miRNA:   3'- -GGCUCCU-----------ACGGCUAGuCGaGG-GGCUG- -5'
24041 5' -58.1 NC_005262.1 + 58655 0.74 0.239324
Target:  5'- gCCG-GcGUGCCGAUCAGCUUCUCGcCg -3'
miRNA:   3'- -GGCuCcUACGGCUAGUCGAGGGGCuG- -5'
24041 5' -58.1 NC_005262.1 + 34909 0.75 0.190178
Target:  5'- gUCGGGGA-GCUGAUCGGCaUCCUCgGACg -3'
miRNA:   3'- -GGCUCCUaCGGCUAGUCG-AGGGG-CUG- -5'
24041 5' -58.1 NC_005262.1 + 34820 1.1 0.000566
Target:  5'- uCCGAGGAUGCCGAUCAGCUCCCCGACu -3'
miRNA:   3'- -GGCUCCUACGGCUAGUCGAGGGGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.