miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24042 3' -52.1 NC_005262.1 + 58943 0.66 0.916438
Target:  5'- --cUGCGC-CGGCGUGACgucgCCGAUCu -3'
miRNA:   3'- gauGCGCGaGUUGCAUUGg---GGCUAGu -5'
24042 3' -52.1 NC_005262.1 + 1709 0.66 0.910039
Target:  5'- cCUACGCgauuaucgaucuGCUCAACGacuaUGACCCgGAc-- -3'
miRNA:   3'- -GAUGCG------------CGAGUUGC----AUUGGGgCUagu -5'
24042 3' -52.1 NC_005262.1 + 37346 0.66 0.910039
Target:  5'- --uCGCGCuUCGACGUGcACuUCUGGUCAu -3'
miRNA:   3'- gauGCGCG-AGUUGCAU-UG-GGGCUAGU- -5'
24042 3' -52.1 NC_005262.1 + 12658 0.66 0.903363
Target:  5'- -cGCGCGCggcgcgCGGCG-AACCCUGcgCc -3'
miRNA:   3'- gaUGCGCGa-----GUUGCaUUGGGGCuaGu -5'
24042 3' -52.1 NC_005262.1 + 3116 0.66 0.896412
Target:  5'- -gGCGCcgGCUCAACGgcuuCCgCCgGAUCAu -3'
miRNA:   3'- gaUGCG--CGAGUUGCauu-GG-GG-CUAGU- -5'
24042 3' -52.1 NC_005262.1 + 33691 0.66 0.896412
Target:  5'- cCUGCGaCGUcggggCGACugcgGUGGCCUCGAUCGu -3'
miRNA:   3'- -GAUGC-GCGa----GUUG----CAUUGGGGCUAGU- -5'
24042 3' -52.1 NC_005262.1 + 54815 0.66 0.896412
Target:  5'- cCUGauCGCggAACGUGACCuuGAUCu -3'
miRNA:   3'- -GAUgcGCGagUUGCAUUGGggCUAGu -5'
24042 3' -52.1 NC_005262.1 + 34582 0.66 0.896412
Target:  5'- gUGCGCGCcguGCGgcGCCgUGAUCc -3'
miRNA:   3'- gAUGCGCGaguUGCauUGGgGCUAGu -5'
24042 3' -52.1 NC_005262.1 + 9386 0.66 0.896412
Target:  5'- gUugGCGacagccucccCUCAACGaguaUGGCCCCGGUaCAc -3'
miRNA:   3'- gAugCGC----------GAGUUGC----AUUGGGGCUA-GU- -5'
24042 3' -52.1 NC_005262.1 + 13173 0.66 0.895702
Target:  5'- cCUugGCGggaguUUCAACGguaaggcUAACCCUGGUCc -3'
miRNA:   3'- -GAugCGC-----GAGUUGC-------AUUGGGGCUAGu -5'
24042 3' -52.1 NC_005262.1 + 33328 0.66 0.88919
Target:  5'- ---aGCGCUCGACGUGcGCgUCGAUg- -3'
miRNA:   3'- gaugCGCGAGUUGCAU-UGgGGCUAgu -5'
24042 3' -52.1 NC_005262.1 + 55475 0.66 0.88919
Target:  5'- aUGCgGCGCUCGaucugcuugcGCGUGA-UCCGGUCGc -3'
miRNA:   3'- gAUG-CGCGAGU----------UGCAUUgGGGCUAGU- -5'
24042 3' -52.1 NC_005262.1 + 51416 0.66 0.881701
Target:  5'- -cGCGUGCUCGGCGgcGCgCgCGAgggCGa -3'
miRNA:   3'- gaUGCGCGAGUUGCauUGgG-GCUa--GU- -5'
24042 3' -52.1 NC_005262.1 + 48794 0.66 0.881701
Target:  5'- gUGCGCgaGCUCAcgagcCGU-AUCCCGGUCGu -3'
miRNA:   3'- gAUGCG--CGAGUu----GCAuUGGGGCUAGU- -5'
24042 3' -52.1 NC_005262.1 + 10017 0.67 0.873952
Target:  5'- -aGCGCGCUgcgcuuugcgcCggUGUGAgCUCGAUCGu -3'
miRNA:   3'- gaUGCGCGA-----------GuuGCAUUgGGGCUAGU- -5'
24042 3' -52.1 NC_005262.1 + 27455 0.67 0.873952
Target:  5'- -gAgGCGC-CGACGacGGCCUCGGUCGg -3'
miRNA:   3'- gaUgCGCGaGUUGCa-UUGGGGCUAGU- -5'
24042 3' -52.1 NC_005262.1 + 60840 0.67 0.873952
Target:  5'- cCUACGCGaUCGGCGUGGCgauggCCGAggCAa -3'
miRNA:   3'- -GAUGCGCgAGUUGCAUUGg----GGCUa-GU- -5'
24042 3' -52.1 NC_005262.1 + 43713 0.67 0.87078
Target:  5'- -gACGCGCUCAccgacaagaagguCGaAACCgCGAUCGu -3'
miRNA:   3'- gaUGCGCGAGUu------------GCaUUGGgGCUAGU- -5'
24042 3' -52.1 NC_005262.1 + 23437 0.67 0.865948
Target:  5'- -cGCGCGCUUcACGccGGCCgUGGUCGa -3'
miRNA:   3'- gaUGCGCGAGuUGCa-UUGGgGCUAGU- -5'
24042 3' -52.1 NC_005262.1 + 55352 0.67 0.865948
Target:  5'- --cCGCGCUCGACGaGACggacaagagcgaCCgGAUCAc -3'
miRNA:   3'- gauGCGCGAGUUGCaUUG------------GGgCUAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.