Results 21 - 40 of 61 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
24042 | 3' | -52.1 | NC_005262.1 | + | 25984 | 0.67 | 0.857697 |
Target: 5'- aUGCGCGCugcucggcaUCGAuCGUGugccgugcuucGCCUCGAUCGu -3' miRNA: 3'- gAUGCGCG---------AGUU-GCAU-----------UGGGGCUAGU- -5' |
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24042 | 3' | -52.1 | NC_005262.1 | + | 27455 | 0.67 | 0.873952 |
Target: 5'- -gAgGCGC-CGACGacGGCCUCGGUCGg -3' miRNA: 3'- gaUgCGCGaGUUGCa-UUGGGGCUAGU- -5' |
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24042 | 3' | -52.1 | NC_005262.1 | + | 10509 | 0.67 | 0.857697 |
Target: 5'- -cAUGCGgUCAGCGacGAUCUCGGUCGu -3' miRNA: 3'- gaUGCGCgAGUUGCa-UUGGGGCUAGU- -5' |
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24042 | 3' | -52.1 | NC_005262.1 | + | 59227 | 0.67 | 0.849205 |
Target: 5'- aUGCGCGCggCGACGcGGCCCggcCGGUUc -3' miRNA: 3'- gAUGCGCGa-GUUGCaUUGGG---GCUAGu -5' |
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24042 | 3' | -52.1 | NC_005262.1 | + | 51655 | 0.67 | 0.846612 |
Target: 5'- -gGCGCGCUCAagcuccgcGCGcGACCacgugguacgcgagCCGGUCGc -3' miRNA: 3'- gaUGCGCGAGU--------UGCaUUGG--------------GGCUAGU- -5' |
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24042 | 3' | -52.1 | NC_005262.1 | + | 28646 | 0.67 | 0.840482 |
Target: 5'- -cGCGCGCgCGGCGgaaGCCCCaGAUa- -3' miRNA: 3'- gaUGCGCGaGUUGCau-UGGGG-CUAgu -5' |
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24042 | 3' | -52.1 | NC_005262.1 | + | 49619 | 0.67 | 0.840482 |
Target: 5'- -aGCGCGCUCuGCGgcagcuCCUCGAgCAg -3' miRNA: 3'- gaUGCGCGAGuUGCauu---GGGGCUaGU- -5' |
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24042 | 3' | -52.1 | NC_005262.1 | + | 57754 | 0.67 | 0.857697 |
Target: 5'- -gGCGCGCgagaagUCGAuCGU-GCCgCCGAUCGa -3' miRNA: 3'- gaUGCGCG------AGUU-GCAuUGG-GGCUAGU- -5' |
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24042 | 3' | -52.1 | NC_005262.1 | + | 40675 | 0.67 | 0.840482 |
Target: 5'- -cACGCGCaUAGCGUcuacGACCCUGGaCAc -3' miRNA: 3'- gaUGCGCGaGUUGCA----UUGGGGCUaGU- -5' |
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24042 | 3' | -52.1 | NC_005262.1 | + | 60840 | 0.67 | 0.873952 |
Target: 5'- cCUACGCGaUCGGCGUGGCgauggCCGAggCAa -3' miRNA: 3'- -GAUGCGCgAGUUGCAUUGg----GGCUa-GU- -5' |
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24042 | 3' | -52.1 | NC_005262.1 | + | 57505 | 0.67 | 0.848343 |
Target: 5'- -gGCGCcgaaGUUCAGCGUcgcgccgggcaucGACCgCGAUCAg -3' miRNA: 3'- gaUGCG----CGAGUUGCA-------------UUGGgGCUAGU- -5' |
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24042 | 3' | -52.1 | NC_005262.1 | + | 43713 | 0.67 | 0.87078 |
Target: 5'- -gACGCGCUCAccgacaagaagguCGaAACCgCGAUCGu -3' miRNA: 3'- gaUGCGCGAGUu------------GCaUUGGgGCUAGU- -5' |
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24042 | 3' | -52.1 | NC_005262.1 | + | 19447 | 0.67 | 0.849205 |
Target: 5'- ---aGCGCUgGGCGuUGGCCUCGAUg- -3' miRNA: 3'- gaugCGCGAgUUGC-AUUGGGGCUAgu -5' |
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24042 | 3' | -52.1 | NC_005262.1 | + | 55352 | 0.67 | 0.865948 |
Target: 5'- --cCGCGCUCGACGaGACggacaagagcgaCCgGAUCAc -3' miRNA: 3'- gauGCGCGAGUUGCaUUG------------GGgCUAGU- -5' |
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24042 | 3' | -52.1 | NC_005262.1 | + | 63723 | 0.67 | 0.857697 |
Target: 5'- gCUACGUGCgUGACGUGuGCCUCGAg-- -3' miRNA: 3'- -GAUGCGCGaGUUGCAU-UGGGGCUagu -5' |
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24042 | 3' | -52.1 | NC_005262.1 | + | 19701 | 0.68 | 0.822377 |
Target: 5'- -aGCGCGUcaUCGACaccACCCCGAUUc -3' miRNA: 3'- gaUGCGCG--AGUUGcauUGGGGCUAGu -5' |
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24042 | 3' | -52.1 | NC_005262.1 | + | 45157 | 0.68 | 0.831536 |
Target: 5'- cCUGCGCGC---GCGUGauGCCCUGGaaUCGg -3' miRNA: 3'- -GAUGCGCGaguUGCAU--UGGGGCU--AGU- -5' |
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24042 | 3' | -52.1 | NC_005262.1 | + | 46019 | 0.68 | 0.822377 |
Target: 5'- --cCGUcCUCGACGUAGCCCgacuUGAUCGg -3' miRNA: 3'- gauGCGcGAGUUGCAUUGGG----GCUAGU- -5' |
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24042 | 3' | -52.1 | NC_005262.1 | + | 7547 | 0.68 | 0.803459 |
Target: 5'- -gGCGCGCUCGACGacauccuUCCCGugcagcGUCAc -3' miRNA: 3'- gaUGCGCGAGUUGCauu----GGGGC------UAGU- -5' |
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24042 | 3' | -52.1 | NC_005262.1 | + | 15900 | 0.68 | 0.793721 |
Target: 5'- -cGCGUGCgcgCGACGUGGCgCCgCGAUg- -3' miRNA: 3'- gaUGCGCGa--GUUGCAUUG-GG-GCUAgu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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