Results 1 - 20 of 61 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24042 | 3' | -52.1 | NC_005262.1 | + | 35490 | 1.09 | 0.002626 |
Target: 5'- uCUACGCGCUCAACGUAACCCCGAUCAa -3' miRNA: 3'- -GAUGCGCGAGUUGCAUUGGGGCUAGU- -5' |
|||||||
24042 | 3' | -52.1 | NC_005262.1 | + | 37579 | 0.76 | 0.385267 |
Target: 5'- gUAUGCGCUCuGCGaAACCuuGAUCGc -3' miRNA: 3'- gAUGCGCGAGuUGCaUUGGggCUAGU- -5' |
|||||||
24042 | 3' | -52.1 | NC_005262.1 | + | 54335 | 0.75 | 0.441858 |
Target: 5'- -gACGCGCUCGGC---ACCUCGAUCu -3' miRNA: 3'- gaUGCGCGAGUUGcauUGGGGCUAGu -5' |
|||||||
24042 | 3' | -52.1 | NC_005262.1 | + | 43420 | 0.74 | 0.502862 |
Target: 5'- -cGCgGCGCUCAACGUcuaUCCGAUCGa -3' miRNA: 3'- gaUG-CGCGAGUUGCAuugGGGCUAGU- -5' |
|||||||
24042 | 3' | -52.1 | NC_005262.1 | + | 41653 | 0.74 | 0.492426 |
Target: 5'- gUACGUGUugUgGGCGUGGCCCgGAUCGu -3' miRNA: 3'- gAUGCGCG--AgUUGCAUUGGGgCUAGU- -5' |
|||||||
24042 | 3' | -52.1 | NC_005262.1 | + | 49555 | 0.72 | 0.578217 |
Target: 5'- aUGCGCGCuUCAGCGUgcucuugcuGACCUucuCGGUCAc -3' miRNA: 3'- gAUGCGCG-AGUUGCA---------UUGGG---GCUAGU- -5' |
|||||||
24042 | 3' | -52.1 | NC_005262.1 | + | 15715 | 0.72 | 0.589226 |
Target: 5'- gCUAUGCGCUCGACGUGGCg-CGcUCAu -3' miRNA: 3'- -GAUGCGCGAGUUGCAUUGggGCuAGU- -5' |
|||||||
24042 | 3' | -52.1 | NC_005262.1 | + | 22923 | 0.72 | 0.600271 |
Target: 5'- gCUACGCGCUCGccgACGccauGCUCCGcgCGg -3' miRNA: 3'- -GAUGCGCGAGU---UGCau--UGGGGCuaGU- -5' |
|||||||
24042 | 3' | -52.1 | NC_005262.1 | + | 34006 | 0.71 | 0.666787 |
Target: 5'- -gGCGCGgaCGGCGUGACgCCGGgccgCAu -3' miRNA: 3'- gaUGCGCgaGUUGCAUUGgGGCUa---GU- -5' |
|||||||
24042 | 3' | -52.1 | NC_005262.1 | + | 16287 | 0.71 | 0.677819 |
Target: 5'- gCUGCGCGCcgcucgCGGCGUGcaaCCGAUCGa -3' miRNA: 3'- -GAUGCGCGa-----GUUGCAUuggGGCUAGU- -5' |
|||||||
24042 | 3' | -52.1 | NC_005262.1 | + | 1516 | 0.71 | 0.666787 |
Target: 5'- -cGCuGCGCUCGACGaagcGGCCgCGGUCGu -3' miRNA: 3'- gaUG-CGCGAGUUGCa---UUGGgGCUAGU- -5' |
|||||||
24042 | 3' | -52.1 | NC_005262.1 | + | 36284 | 0.71 | 0.644635 |
Target: 5'- -gGCGCGCggCGACGcgaacACCUCGGUCGa -3' miRNA: 3'- gaUGCGCGa-GUUGCau---UGGGGCUAGU- -5' |
|||||||
24042 | 3' | -52.1 | NC_005262.1 | + | 43855 | 0.7 | 0.732089 |
Target: 5'- aCUACGCGCUCG-C-UGAgCCCGAacuUCGu -3' miRNA: 3'- -GAUGCGCGAGUuGcAUUgGGGCU---AGU- -5' |
|||||||
24042 | 3' | -52.1 | NC_005262.1 | + | 60584 | 0.7 | 0.699739 |
Target: 5'- cCUGCGcCGCgcggccCGGCGUcucGCCCUGAUCGc -3' miRNA: 3'- -GAUGC-GCGa-----GUUGCAu--UGGGGCUAGU- -5' |
|||||||
24042 | 3' | -52.1 | NC_005262.1 | + | 55645 | 0.7 | 0.688807 |
Target: 5'- -cGCGCGCUCGuggccGCGUccGGCaCgCCGGUCAc -3' miRNA: 3'- gaUGCGCGAGU-----UGCA--UUG-G-GGCUAGU- -5' |
|||||||
24042 | 3' | -52.1 | NC_005262.1 | + | 5930 | 0.69 | 0.783811 |
Target: 5'- -aGCGUGCa-GAUG-AACCCCGAUCu -3' miRNA: 3'- gaUGCGCGagUUGCaUUGGGGCUAGu -5' |
|||||||
24042 | 3' | -52.1 | NC_005262.1 | + | 23409 | 0.69 | 0.773741 |
Target: 5'- -cGCGUGCUCGugcGCGgcGCCuuGAUg- -3' miRNA: 3'- gaUGCGCGAGU---UGCauUGGggCUAgu -5' |
|||||||
24042 | 3' | -52.1 | NC_005262.1 | + | 35246 | 0.69 | 0.753166 |
Target: 5'- uUGC-CGC-CAGCGUcGCCCgGAUCGg -3' miRNA: 3'- gAUGcGCGaGUUGCAuUGGGgCUAGU- -5' |
|||||||
24042 | 3' | -52.1 | NC_005262.1 | + | 19701 | 0.68 | 0.822377 |
Target: 5'- -aGCGCGUcaUCGACaccACCCCGAUUc -3' miRNA: 3'- gaUGCGCG--AGUUGcauUGGGGCUAGu -5' |
|||||||
24042 | 3' | -52.1 | NC_005262.1 | + | 15900 | 0.68 | 0.793721 |
Target: 5'- -cGCGUGCgcgCGACGUGGCgCCgCGAUg- -3' miRNA: 3'- gaUGCGCGa--GUUGCAUUG-GG-GCUAgu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home