Results 41 - 60 of 61 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24042 | 3' | -52.1 | NC_005262.1 | + | 60840 | 0.67 | 0.873952 |
Target: 5'- cCUACGCGaUCGGCGUGGCgauggCCGAggCAa -3' miRNA: 3'- -GAUGCGCgAGUUGCAUUGg----GGCUa-GU- -5' |
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24042 | 3' | -52.1 | NC_005262.1 | + | 39248 | 0.67 | 0.865948 |
Target: 5'- -aGCGCGCuUCAGCG-AACCgCUGA-CAg -3' miRNA: 3'- gaUGCGCG-AGUUGCaUUGG-GGCUaGU- -5' |
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24042 | 3' | -52.1 | NC_005262.1 | + | 43713 | 0.67 | 0.87078 |
Target: 5'- -gACGCGCUCAccgacaagaagguCGaAACCgCGAUCGu -3' miRNA: 3'- gaUGCGCGAGUu------------GCaUUGGgGCUAGU- -5' |
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24042 | 3' | -52.1 | NC_005262.1 | + | 55352 | 0.67 | 0.865948 |
Target: 5'- --cCGCGCUCGACGaGACggacaagagcgaCCgGAUCAc -3' miRNA: 3'- gauGCGCGAGUUGCaUUG------------GGgCUAGU- -5' |
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24042 | 3' | -52.1 | NC_005262.1 | + | 10017 | 0.67 | 0.873952 |
Target: 5'- -aGCGCGCUgcgcuuugcgcCggUGUGAgCUCGAUCGu -3' miRNA: 3'- gaUGCGCGA-----------GuuGCAUUgGGGCUAGU- -5' |
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24042 | 3' | -52.1 | NC_005262.1 | + | 27455 | 0.67 | 0.873952 |
Target: 5'- -gAgGCGC-CGACGacGGCCUCGGUCGg -3' miRNA: 3'- gaUgCGCGaGUUGCa-UUGGGGCUAGU- -5' |
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24042 | 3' | -52.1 | NC_005262.1 | + | 23437 | 0.67 | 0.865948 |
Target: 5'- -cGCGCGCUUcACGccGGCCgUGGUCGa -3' miRNA: 3'- gaUGCGCGAGuUGCa-UUGGgGCUAGU- -5' |
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24042 | 3' | -52.1 | NC_005262.1 | + | 33328 | 0.66 | 0.88919 |
Target: 5'- ---aGCGCUCGACGUGcGCgUCGAUg- -3' miRNA: 3'- gaugCGCGAGUUGCAU-UGgGGCUAgu -5' |
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24042 | 3' | -52.1 | NC_005262.1 | + | 9386 | 0.66 | 0.896412 |
Target: 5'- gUugGCGacagccucccCUCAACGaguaUGGCCCCGGUaCAc -3' miRNA: 3'- gAugCGC----------GAGUUGC----AUUGGGGCUA-GU- -5' |
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24042 | 3' | -52.1 | NC_005262.1 | + | 48794 | 0.66 | 0.881701 |
Target: 5'- gUGCGCgaGCUCAcgagcCGU-AUCCCGGUCGu -3' miRNA: 3'- gAUGCG--CGAGUu----GCAuUGGGGCUAGU- -5' |
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24042 | 3' | -52.1 | NC_005262.1 | + | 51416 | 0.66 | 0.881701 |
Target: 5'- -cGCGUGCUCGGCGgcGCgCgCGAgggCGa -3' miRNA: 3'- gaUGCGCGAGUUGCauUGgG-GCUa--GU- -5' |
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24042 | 3' | -52.1 | NC_005262.1 | + | 13173 | 0.66 | 0.895702 |
Target: 5'- cCUugGCGggaguUUCAACGguaaggcUAACCCUGGUCc -3' miRNA: 3'- -GAugCGC-----GAGUUGC-------AUUGGGGCUAGu -5' |
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24042 | 3' | -52.1 | NC_005262.1 | + | 34582 | 0.66 | 0.896412 |
Target: 5'- gUGCGCGCcguGCGgcGCCgUGAUCc -3' miRNA: 3'- gAUGCGCGaguUGCauUGGgGCUAGu -5' |
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24042 | 3' | -52.1 | NC_005262.1 | + | 3116 | 0.66 | 0.896412 |
Target: 5'- -gGCGCcgGCUCAACGgcuuCCgCCgGAUCAu -3' miRNA: 3'- gaUGCG--CGAGUUGCauu-GG-GG-CUAGU- -5' |
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24042 | 3' | -52.1 | NC_005262.1 | + | 12658 | 0.66 | 0.903363 |
Target: 5'- -cGCGCGCggcgcgCGGCG-AACCCUGcgCc -3' miRNA: 3'- gaUGCGCGa-----GUUGCaUUGGGGCuaGu -5' |
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24042 | 3' | -52.1 | NC_005262.1 | + | 37346 | 0.66 | 0.910039 |
Target: 5'- --uCGCGCuUCGACGUGcACuUCUGGUCAu -3' miRNA: 3'- gauGCGCG-AGUUGCAU-UG-GGGCUAGU- -5' |
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24042 | 3' | -52.1 | NC_005262.1 | + | 1709 | 0.66 | 0.910039 |
Target: 5'- cCUACGCgauuaucgaucuGCUCAACGacuaUGACCCgGAc-- -3' miRNA: 3'- -GAUGCG------------CGAGUUGC----AUUGGGgCUagu -5' |
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24042 | 3' | -52.1 | NC_005262.1 | + | 33691 | 0.66 | 0.896412 |
Target: 5'- cCUGCGaCGUcggggCGACugcgGUGGCCUCGAUCGu -3' miRNA: 3'- -GAUGC-GCGa----GUUG----CAUUGGGGCUAGU- -5' |
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24042 | 3' | -52.1 | NC_005262.1 | + | 54815 | 0.66 | 0.896412 |
Target: 5'- cCUGauCGCggAACGUGACCuuGAUCu -3' miRNA: 3'- -GAUgcGCGagUUGCAUUGGggCUAGu -5' |
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24042 | 3' | -52.1 | NC_005262.1 | + | 55475 | 0.66 | 0.88919 |
Target: 5'- aUGCgGCGCUCGaucugcuugcGCGUGA-UCCGGUCGc -3' miRNA: 3'- gAUG-CGCGAGU----------UGCAUUgGGGCUAGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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