miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24042 3' -52.1 NC_005262.1 + 35490 1.09 0.002626
Target:  5'- uCUACGCGCUCAACGUAACCCCGAUCAa -3'
miRNA:   3'- -GAUGCGCGAGUUGCAUUGGGGCUAGU- -5'
24042 3' -52.1 NC_005262.1 + 37579 0.76 0.385267
Target:  5'- gUAUGCGCUCuGCGaAACCuuGAUCGc -3'
miRNA:   3'- gAUGCGCGAGuUGCaUUGGggCUAGU- -5'
24042 3' -52.1 NC_005262.1 + 54335 0.75 0.441858
Target:  5'- -gACGCGCUCGGC---ACCUCGAUCu -3'
miRNA:   3'- gaUGCGCGAGUUGcauUGGGGCUAGu -5'
24042 3' -52.1 NC_005262.1 + 41653 0.74 0.492426
Target:  5'- gUACGUGUugUgGGCGUGGCCCgGAUCGu -3'
miRNA:   3'- gAUGCGCG--AgUUGCAUUGGGgCUAGU- -5'
24042 3' -52.1 NC_005262.1 + 43420 0.74 0.502862
Target:  5'- -cGCgGCGCUCAACGUcuaUCCGAUCGa -3'
miRNA:   3'- gaUG-CGCGAGUUGCAuugGGGCUAGU- -5'
24042 3' -52.1 NC_005262.1 + 49555 0.72 0.578217
Target:  5'- aUGCGCGCuUCAGCGUgcucuugcuGACCUucuCGGUCAc -3'
miRNA:   3'- gAUGCGCG-AGUUGCA---------UUGGG---GCUAGU- -5'
24042 3' -52.1 NC_005262.1 + 15715 0.72 0.589226
Target:  5'- gCUAUGCGCUCGACGUGGCg-CGcUCAu -3'
miRNA:   3'- -GAUGCGCGAGUUGCAUUGggGCuAGU- -5'
24042 3' -52.1 NC_005262.1 + 22923 0.72 0.600271
Target:  5'- gCUACGCGCUCGccgACGccauGCUCCGcgCGg -3'
miRNA:   3'- -GAUGCGCGAGU---UGCau--UGGGGCuaGU- -5'
24042 3' -52.1 NC_005262.1 + 36284 0.71 0.644635
Target:  5'- -gGCGCGCggCGACGcgaacACCUCGGUCGa -3'
miRNA:   3'- gaUGCGCGa-GUUGCau---UGGGGCUAGU- -5'
24042 3' -52.1 NC_005262.1 + 34006 0.71 0.666787
Target:  5'- -gGCGCGgaCGGCGUGACgCCGGgccgCAu -3'
miRNA:   3'- gaUGCGCgaGUUGCAUUGgGGCUa---GU- -5'
24042 3' -52.1 NC_005262.1 + 1516 0.71 0.666787
Target:  5'- -cGCuGCGCUCGACGaagcGGCCgCGGUCGu -3'
miRNA:   3'- gaUG-CGCGAGUUGCa---UUGGgGCUAGU- -5'
24042 3' -52.1 NC_005262.1 + 16287 0.71 0.677819
Target:  5'- gCUGCGCGCcgcucgCGGCGUGcaaCCGAUCGa -3'
miRNA:   3'- -GAUGCGCGa-----GUUGCAUuggGGCUAGU- -5'
24042 3' -52.1 NC_005262.1 + 55645 0.7 0.688807
Target:  5'- -cGCGCGCUCGuggccGCGUccGGCaCgCCGGUCAc -3'
miRNA:   3'- gaUGCGCGAGU-----UGCA--UUG-G-GGCUAGU- -5'
24042 3' -52.1 NC_005262.1 + 60584 0.7 0.699739
Target:  5'- cCUGCGcCGCgcggccCGGCGUcucGCCCUGAUCGc -3'
miRNA:   3'- -GAUGC-GCGa-----GUUGCAu--UGGGGCUAGU- -5'
24042 3' -52.1 NC_005262.1 + 43855 0.7 0.732089
Target:  5'- aCUACGCGCUCG-C-UGAgCCCGAacuUCGu -3'
miRNA:   3'- -GAUGCGCGAGUuGcAUUgGGGCU---AGU- -5'
24042 3' -52.1 NC_005262.1 + 35246 0.69 0.753166
Target:  5'- uUGC-CGC-CAGCGUcGCCCgGAUCGg -3'
miRNA:   3'- gAUGcGCGaGUUGCAuUGGGgCUAGU- -5'
24042 3' -52.1 NC_005262.1 + 23409 0.69 0.773741
Target:  5'- -cGCGUGCUCGugcGCGgcGCCuuGAUg- -3'
miRNA:   3'- gaUGCGCGAGU---UGCauUGGggCUAgu -5'
24042 3' -52.1 NC_005262.1 + 5930 0.69 0.783811
Target:  5'- -aGCGUGCa-GAUG-AACCCCGAUCu -3'
miRNA:   3'- gaUGCGCGagUUGCaUUGGGGCUAGu -5'
24042 3' -52.1 NC_005262.1 + 13094 0.68 0.793721
Target:  5'- -gGCGCGCUCcugcGCGUAcACCCaCG-UCAc -3'
miRNA:   3'- gaUGCGCGAGu---UGCAU-UGGG-GCuAGU- -5'
24042 3' -52.1 NC_005262.1 + 15712 0.68 0.793721
Target:  5'- -gACGCGUUCAGCcgcGCCUCGAUg- -3'
miRNA:   3'- gaUGCGCGAGUUGcauUGGGGCUAgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.