miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24042 3' -52.1 NC_005262.1 + 21438 0.67 0.865948
Target:  5'- gCUGCGCGCggccuUGgccGCCUCGAUCGc -3'
miRNA:   3'- -GAUGCGCGaguu-GCau-UGGGGCUAGU- -5'
24042 3' -52.1 NC_005262.1 + 39248 0.67 0.865948
Target:  5'- -aGCGCGCuUCAGCG-AACCgCUGA-CAg -3'
miRNA:   3'- gaUGCGCG-AGUUGCaUUGG-GGCUaGU- -5'
24042 3' -52.1 NC_005262.1 + 23437 0.67 0.865948
Target:  5'- -cGCGCGCUUcACGccGGCCgUGGUCGa -3'
miRNA:   3'- gaUGCGCGAGuUGCa-UUGGgGCUAGU- -5'
24042 3' -52.1 NC_005262.1 + 57754 0.67 0.857697
Target:  5'- -gGCGCGCgagaagUCGAuCGU-GCCgCCGAUCGa -3'
miRNA:   3'- gaUGCGCG------AGUU-GCAuUGG-GGCUAGU- -5'
24042 3' -52.1 NC_005262.1 + 10509 0.67 0.857697
Target:  5'- -cAUGCGgUCAGCGacGAUCUCGGUCGu -3'
miRNA:   3'- gaUGCGCgAGUUGCa-UUGGGGCUAGU- -5'
24042 3' -52.1 NC_005262.1 + 25984 0.67 0.857697
Target:  5'- aUGCGCGCugcucggcaUCGAuCGUGugccgugcuucGCCUCGAUCGu -3'
miRNA:   3'- gAUGCGCG---------AGUU-GCAU-----------UGGGGCUAGU- -5'
24042 3' -52.1 NC_005262.1 + 63723 0.67 0.857697
Target:  5'- gCUACGUGCgUGACGUGuGCCUCGAg-- -3'
miRNA:   3'- -GAUGCGCGaGUUGCAU-UGGGGCUagu -5'
24042 3' -52.1 NC_005262.1 + 33334 0.67 0.857697
Target:  5'- aCUGCGuCGCUgcGCGgcaccguGCCgCCGAUCGa -3'
miRNA:   3'- -GAUGC-GCGAguUGCau-----UGG-GGCUAGU- -5'
24042 3' -52.1 NC_005262.1 + 59227 0.67 0.849205
Target:  5'- aUGCGCGCggCGACGcGGCCCggcCGGUUc -3'
miRNA:   3'- gAUGCGCGa-GUUGCaUUGGG---GCUAGu -5'
24042 3' -52.1 NC_005262.1 + 19447 0.67 0.849205
Target:  5'- ---aGCGCUgGGCGuUGGCCUCGAUg- -3'
miRNA:   3'- gaugCGCGAgUUGC-AUUGGGGCUAgu -5'
24042 3' -52.1 NC_005262.1 + 57505 0.67 0.848343
Target:  5'- -gGCGCcgaaGUUCAGCGUcgcgccgggcaucGACCgCGAUCAg -3'
miRNA:   3'- gaUGCG----CGAGUUGCA-------------UUGGgGCUAGU- -5'
24042 3' -52.1 NC_005262.1 + 51655 0.67 0.846612
Target:  5'- -gGCGCGCUCAagcuccgcGCGcGACCacgugguacgcgagCCGGUCGc -3'
miRNA:   3'- gaUGCGCGAGU--------UGCaUUGG--------------GGCUAGU- -5'
24042 3' -52.1 NC_005262.1 + 28646 0.67 0.840482
Target:  5'- -cGCGCGCgCGGCGgaaGCCCCaGAUa- -3'
miRNA:   3'- gaUGCGCGaGUUGCau-UGGGG-CUAgu -5'
24042 3' -52.1 NC_005262.1 + 49619 0.67 0.840482
Target:  5'- -aGCGCGCUCuGCGgcagcuCCUCGAgCAg -3'
miRNA:   3'- gaUGCGCGAGuUGCauu---GGGGCUaGU- -5'
24042 3' -52.1 NC_005262.1 + 40675 0.67 0.840482
Target:  5'- -cACGCGCaUAGCGUcuacGACCCUGGaCAc -3'
miRNA:   3'- gaUGCGCGaGUUGCA----UUGGGGCUaGU- -5'
24042 3' -52.1 NC_005262.1 + 45157 0.68 0.831536
Target:  5'- cCUGCGCGC---GCGUGauGCCCUGGaaUCGg -3'
miRNA:   3'- -GAUGCGCGaguUGCAU--UGGGGCU--AGU- -5'
24042 3' -52.1 NC_005262.1 + 46019 0.68 0.822377
Target:  5'- --cCGUcCUCGACGUAGCCCgacuUGAUCGg -3'
miRNA:   3'- gauGCGcGAGUUGCAUUGGG----GCUAGU- -5'
24042 3' -52.1 NC_005262.1 + 19701 0.68 0.822377
Target:  5'- -aGCGCGUcaUCGACaccACCCCGAUUc -3'
miRNA:   3'- gaUGCGCG--AGUUGcauUGGGGCUAGu -5'
24042 3' -52.1 NC_005262.1 + 7547 0.68 0.803459
Target:  5'- -gGCGCGCUCGACGacauccuUCCCGugcagcGUCAc -3'
miRNA:   3'- gaUGCGCGAGUUGCauu----GGGGC------UAGU- -5'
24042 3' -52.1 NC_005262.1 + 15900 0.68 0.793721
Target:  5'- -cGCGUGCgcgCGACGUGGCgCCgCGAUg- -3'
miRNA:   3'- gaUGCGCGa--GUUGCAUUG-GG-GCUAgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.