miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24042 3' -52.1 NC_005262.1 + 1516 0.71 0.666787
Target:  5'- -cGCuGCGCUCGACGaagcGGCCgCGGUCGu -3'
miRNA:   3'- gaUG-CGCGAGUUGCa---UUGGgGCUAGU- -5'
24042 3' -52.1 NC_005262.1 + 1709 0.66 0.910039
Target:  5'- cCUACGCgauuaucgaucuGCUCAACGacuaUGACCCgGAc-- -3'
miRNA:   3'- -GAUGCG------------CGAGUUGC----AUUGGGgCUagu -5'
24042 3' -52.1 NC_005262.1 + 3116 0.66 0.896412
Target:  5'- -gGCGCcgGCUCAACGgcuuCCgCCgGAUCAu -3'
miRNA:   3'- gaUGCG--CGAGUUGCauu-GG-GG-CUAGU- -5'
24042 3' -52.1 NC_005262.1 + 5930 0.69 0.783811
Target:  5'- -aGCGUGCa-GAUG-AACCCCGAUCu -3'
miRNA:   3'- gaUGCGCGagUUGCaUUGGGGCUAGu -5'
24042 3' -52.1 NC_005262.1 + 7547 0.68 0.803459
Target:  5'- -gGCGCGCUCGACGacauccuUCCCGugcagcGUCAc -3'
miRNA:   3'- gaUGCGCGAGUUGCauu----GGGGC------UAGU- -5'
24042 3' -52.1 NC_005262.1 + 9386 0.66 0.896412
Target:  5'- gUugGCGacagccucccCUCAACGaguaUGGCCCCGGUaCAc -3'
miRNA:   3'- gAugCGC----------GAGUUGC----AUUGGGGCUA-GU- -5'
24042 3' -52.1 NC_005262.1 + 10017 0.67 0.873952
Target:  5'- -aGCGCGCUgcgcuuugcgcCggUGUGAgCUCGAUCGu -3'
miRNA:   3'- gaUGCGCGA-----------GuuGCAUUgGGGCUAGU- -5'
24042 3' -52.1 NC_005262.1 + 10509 0.67 0.857697
Target:  5'- -cAUGCGgUCAGCGacGAUCUCGGUCGu -3'
miRNA:   3'- gaUGCGCgAGUUGCa-UUGGGGCUAGU- -5'
24042 3' -52.1 NC_005262.1 + 12658 0.66 0.903363
Target:  5'- -cGCGCGCggcgcgCGGCG-AACCCUGcgCc -3'
miRNA:   3'- gaUGCGCGa-----GUUGCaUUGGGGCuaGu -5'
24042 3' -52.1 NC_005262.1 + 13094 0.68 0.793721
Target:  5'- -gGCGCGCUCcugcGCGUAcACCCaCG-UCAc -3'
miRNA:   3'- gaUGCGCGAGu---UGCAU-UGGG-GCuAGU- -5'
24042 3' -52.1 NC_005262.1 + 13173 0.66 0.895702
Target:  5'- cCUugGCGggaguUUCAACGguaaggcUAACCCUGGUCc -3'
miRNA:   3'- -GAugCGC-----GAGUUGC-------AUUGGGGCUAGu -5'
24042 3' -52.1 NC_005262.1 + 15712 0.68 0.793721
Target:  5'- -gACGCGUUCAGCcgcGCCUCGAUg- -3'
miRNA:   3'- gaUGCGCGAGUUGcauUGGGGCUAgu -5'
24042 3' -52.1 NC_005262.1 + 15715 0.72 0.589226
Target:  5'- gCUAUGCGCUCGACGUGGCg-CGcUCAu -3'
miRNA:   3'- -GAUGCGCGAGUUGCAUUGggGCuAGU- -5'
24042 3' -52.1 NC_005262.1 + 15900 0.68 0.793721
Target:  5'- -cGCGUGCgcgCGACGUGGCgCCgCGAUg- -3'
miRNA:   3'- gaUGCGCGa--GUUGCAUUG-GG-GCUAgu -5'
24042 3' -52.1 NC_005262.1 + 16287 0.71 0.677819
Target:  5'- gCUGCGCGCcgcucgCGGCGUGcaaCCGAUCGa -3'
miRNA:   3'- -GAUGCGCGa-----GUUGCAUuggGGCUAGU- -5'
24042 3' -52.1 NC_005262.1 + 19447 0.67 0.849205
Target:  5'- ---aGCGCUgGGCGuUGGCCUCGAUg- -3'
miRNA:   3'- gaugCGCGAgUUGC-AUUGGGGCUAgu -5'
24042 3' -52.1 NC_005262.1 + 19701 0.68 0.822377
Target:  5'- -aGCGCGUcaUCGACaccACCCCGAUUc -3'
miRNA:   3'- gaUGCGCG--AGUUGcauUGGGGCUAGu -5'
24042 3' -52.1 NC_005262.1 + 21438 0.67 0.865948
Target:  5'- gCUGCGCGCggccuUGgccGCCUCGAUCGc -3'
miRNA:   3'- -GAUGCGCGaguu-GCau-UGGGGCUAGU- -5'
24042 3' -52.1 NC_005262.1 + 21958 0.68 0.793721
Target:  5'- gCUGCGCGgUCGGCuucAGCgCCGAUCc -3'
miRNA:   3'- -GAUGCGCgAGUUGca-UUGgGGCUAGu -5'
24042 3' -52.1 NC_005262.1 + 22923 0.72 0.600271
Target:  5'- gCUACGCGCUCGccgACGccauGCUCCGcgCGg -3'
miRNA:   3'- -GAUGCGCGAGU---UGCau--UGGGGCuaGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.