miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24042 3' -52.1 NC_005262.1 + 23409 0.69 0.773741
Target:  5'- -cGCGUGCUCGugcGCGgcGCCuuGAUg- -3'
miRNA:   3'- gaUGCGCGAGU---UGCauUGGggCUAgu -5'
24042 3' -52.1 NC_005262.1 + 23437 0.67 0.865948
Target:  5'- -cGCGCGCUUcACGccGGCCgUGGUCGa -3'
miRNA:   3'- gaUGCGCGAGuUGCa-UUGGgGCUAGU- -5'
24042 3' -52.1 NC_005262.1 + 25984 0.67 0.857697
Target:  5'- aUGCGCGCugcucggcaUCGAuCGUGugccgugcuucGCCUCGAUCGu -3'
miRNA:   3'- gAUGCGCG---------AGUU-GCAU-----------UGGGGCUAGU- -5'
24042 3' -52.1 NC_005262.1 + 27455 0.67 0.873952
Target:  5'- -gAgGCGC-CGACGacGGCCUCGGUCGg -3'
miRNA:   3'- gaUgCGCGaGUUGCa-UUGGGGCUAGU- -5'
24042 3' -52.1 NC_005262.1 + 28646 0.67 0.840482
Target:  5'- -cGCGCGCgCGGCGgaaGCCCCaGAUa- -3'
miRNA:   3'- gaUGCGCGaGUUGCau-UGGGG-CUAgu -5'
24042 3' -52.1 NC_005262.1 + 33328 0.66 0.88919
Target:  5'- ---aGCGCUCGACGUGcGCgUCGAUg- -3'
miRNA:   3'- gaugCGCGAGUUGCAU-UGgGGCUAgu -5'
24042 3' -52.1 NC_005262.1 + 33334 0.67 0.857697
Target:  5'- aCUGCGuCGCUgcGCGgcaccguGCCgCCGAUCGa -3'
miRNA:   3'- -GAUGC-GCGAguUGCau-----UGG-GGCUAGU- -5'
24042 3' -52.1 NC_005262.1 + 33691 0.66 0.896412
Target:  5'- cCUGCGaCGUcggggCGACugcgGUGGCCUCGAUCGu -3'
miRNA:   3'- -GAUGC-GCGa----GUUG----CAUUGGGGCUAGU- -5'
24042 3' -52.1 NC_005262.1 + 34006 0.71 0.666787
Target:  5'- -gGCGCGgaCGGCGUGACgCCGGgccgCAu -3'
miRNA:   3'- gaUGCGCgaGUUGCAUUGgGGCUa---GU- -5'
24042 3' -52.1 NC_005262.1 + 34582 0.66 0.896412
Target:  5'- gUGCGCGCcguGCGgcGCCgUGAUCc -3'
miRNA:   3'- gAUGCGCGaguUGCauUGGgGCUAGu -5'
24042 3' -52.1 NC_005262.1 + 35246 0.69 0.753166
Target:  5'- uUGC-CGC-CAGCGUcGCCCgGAUCGg -3'
miRNA:   3'- gAUGcGCGaGUUGCAuUGGGgCUAGU- -5'
24042 3' -52.1 NC_005262.1 + 35490 1.09 0.002626
Target:  5'- uCUACGCGCUCAACGUAACCCCGAUCAa -3'
miRNA:   3'- -GAUGCGCGAGUUGCAUUGGGGCUAGU- -5'
24042 3' -52.1 NC_005262.1 + 36284 0.71 0.644635
Target:  5'- -gGCGCGCggCGACGcgaacACCUCGGUCGa -3'
miRNA:   3'- gaUGCGCGa-GUUGCau---UGGGGCUAGU- -5'
24042 3' -52.1 NC_005262.1 + 37346 0.66 0.910039
Target:  5'- --uCGCGCuUCGACGUGcACuUCUGGUCAu -3'
miRNA:   3'- gauGCGCG-AGUUGCAU-UG-GGGCUAGU- -5'
24042 3' -52.1 NC_005262.1 + 37579 0.76 0.385267
Target:  5'- gUAUGCGCUCuGCGaAACCuuGAUCGc -3'
miRNA:   3'- gAUGCGCGAGuUGCaUUGGggCUAGU- -5'
24042 3' -52.1 NC_005262.1 + 39248 0.67 0.865948
Target:  5'- -aGCGCGCuUCAGCG-AACCgCUGA-CAg -3'
miRNA:   3'- gaUGCGCG-AGUUGCaUUGG-GGCUaGU- -5'
24042 3' -52.1 NC_005262.1 + 40675 0.67 0.840482
Target:  5'- -cACGCGCaUAGCGUcuacGACCCUGGaCAc -3'
miRNA:   3'- gaUGCGCGaGUUGCA----UUGGGGCUaGU- -5'
24042 3' -52.1 NC_005262.1 + 41653 0.74 0.492426
Target:  5'- gUACGUGUugUgGGCGUGGCCCgGAUCGu -3'
miRNA:   3'- gAUGCGCG--AgUUGCAUUGGGgCUAGU- -5'
24042 3' -52.1 NC_005262.1 + 43420 0.74 0.502862
Target:  5'- -cGCgGCGCUCAACGUcuaUCCGAUCGa -3'
miRNA:   3'- gaUG-CGCGAGUUGCAuugGGGCUAGU- -5'
24042 3' -52.1 NC_005262.1 + 43713 0.67 0.87078
Target:  5'- -gACGCGCUCAccgacaagaagguCGaAACCgCGAUCGu -3'
miRNA:   3'- gaUGCGCGAGUu------------GCaUUGGgGCUAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.