miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24042 3' -52.1 NC_005262.1 + 63723 0.67 0.857697
Target:  5'- gCUACGUGCgUGACGUGuGCCUCGAg-- -3'
miRNA:   3'- -GAUGCGCGaGUUGCAU-UGGGGCUagu -5'
24042 3' -52.1 NC_005262.1 + 60840 0.67 0.873952
Target:  5'- cCUACGCGaUCGGCGUGGCgauggCCGAggCAa -3'
miRNA:   3'- -GAUGCGCgAGUUGCAUUGg----GGCUa-GU- -5'
24042 3' -52.1 NC_005262.1 + 60584 0.7 0.699739
Target:  5'- cCUGCGcCGCgcggccCGGCGUcucGCCCUGAUCGc -3'
miRNA:   3'- -GAUGC-GCGa-----GUUGCAu--UGGGGCUAGU- -5'
24042 3' -52.1 NC_005262.1 + 59227 0.67 0.849205
Target:  5'- aUGCGCGCggCGACGcGGCCCggcCGGUUc -3'
miRNA:   3'- gAUGCGCGa-GUUGCaUUGGG---GCUAGu -5'
24042 3' -52.1 NC_005262.1 + 58943 0.66 0.916438
Target:  5'- --cUGCGC-CGGCGUGACgucgCCGAUCu -3'
miRNA:   3'- gauGCGCGaGUUGCAUUGg---GGCUAGu -5'
24042 3' -52.1 NC_005262.1 + 57754 0.67 0.857697
Target:  5'- -gGCGCGCgagaagUCGAuCGU-GCCgCCGAUCGa -3'
miRNA:   3'- gaUGCGCG------AGUU-GCAuUGG-GGCUAGU- -5'
24042 3' -52.1 NC_005262.1 + 57505 0.67 0.848343
Target:  5'- -gGCGCcgaaGUUCAGCGUcgcgccgggcaucGACCgCGAUCAg -3'
miRNA:   3'- gaUGCG----CGAGUUGCA-------------UUGGgGCUAGU- -5'
24042 3' -52.1 NC_005262.1 + 55645 0.7 0.688807
Target:  5'- -cGCGCGCUCGuggccGCGUccGGCaCgCCGGUCAc -3'
miRNA:   3'- gaUGCGCGAGU-----UGCA--UUG-G-GGCUAGU- -5'
24042 3' -52.1 NC_005262.1 + 55475 0.66 0.88919
Target:  5'- aUGCgGCGCUCGaucugcuugcGCGUGA-UCCGGUCGc -3'
miRNA:   3'- gAUG-CGCGAGU----------UGCAUUgGGGCUAGU- -5'
24042 3' -52.1 NC_005262.1 + 55352 0.67 0.865948
Target:  5'- --cCGCGCUCGACGaGACggacaagagcgaCCgGAUCAc -3'
miRNA:   3'- gauGCGCGAGUUGCaUUG------------GGgCUAGU- -5'
24042 3' -52.1 NC_005262.1 + 54815 0.66 0.896412
Target:  5'- cCUGauCGCggAACGUGACCuuGAUCu -3'
miRNA:   3'- -GAUgcGCGagUUGCAUUGGggCUAGu -5'
24042 3' -52.1 NC_005262.1 + 54335 0.75 0.441858
Target:  5'- -gACGCGCUCGGC---ACCUCGAUCu -3'
miRNA:   3'- gaUGCGCGAGUUGcauUGGGGCUAGu -5'
24042 3' -52.1 NC_005262.1 + 51655 0.67 0.846612
Target:  5'- -gGCGCGCUCAagcuccgcGCGcGACCacgugguacgcgagCCGGUCGc -3'
miRNA:   3'- gaUGCGCGAGU--------UGCaUUGG--------------GGCUAGU- -5'
24042 3' -52.1 NC_005262.1 + 51416 0.66 0.881701
Target:  5'- -cGCGUGCUCGGCGgcGCgCgCGAgggCGa -3'
miRNA:   3'- gaUGCGCGAGUUGCauUGgG-GCUa--GU- -5'
24042 3' -52.1 NC_005262.1 + 51242 0.67 0.865948
Target:  5'- gCUGCGCGCUCGGCG--ACUUCu-UCAc -3'
miRNA:   3'- -GAUGCGCGAGUUGCauUGGGGcuAGU- -5'
24042 3' -52.1 NC_005262.1 + 49619 0.67 0.840482
Target:  5'- -aGCGCGCUCuGCGgcagcuCCUCGAgCAg -3'
miRNA:   3'- gaUGCGCGAGuUGCauu---GGGGCUaGU- -5'
24042 3' -52.1 NC_005262.1 + 49555 0.72 0.578217
Target:  5'- aUGCGCGCuUCAGCGUgcucuugcuGACCUucuCGGUCAc -3'
miRNA:   3'- gAUGCGCG-AGUUGCA---------UUGGG---GCUAGU- -5'
24042 3' -52.1 NC_005262.1 + 48794 0.66 0.881701
Target:  5'- gUGCGCgaGCUCAcgagcCGU-AUCCCGGUCGu -3'
miRNA:   3'- gAUGCG--CGAGUu----GCAuUGGGGCUAGU- -5'
24042 3' -52.1 NC_005262.1 + 46019 0.68 0.822377
Target:  5'- --cCGUcCUCGACGUAGCCCgacuUGAUCGg -3'
miRNA:   3'- gauGCGcGAGUUGCAUUGGG----GCUAGU- -5'
24042 3' -52.1 NC_005262.1 + 45157 0.68 0.831536
Target:  5'- cCUGCGCGC---GCGUGauGCCCUGGaaUCGg -3'
miRNA:   3'- -GAUGCGCGaguUGCAU--UGGGGCU--AGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.