Results 41 - 60 of 61 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24042 | 3' | -52.1 | NC_005262.1 | + | 23409 | 0.69 | 0.773741 |
Target: 5'- -cGCGUGCUCGugcGCGgcGCCuuGAUg- -3' miRNA: 3'- gaUGCGCGAGU---UGCauUGGggCUAgu -5' |
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24042 | 3' | -52.1 | NC_005262.1 | + | 22923 | 0.72 | 0.600271 |
Target: 5'- gCUACGCGCUCGccgACGccauGCUCCGcgCGg -3' miRNA: 3'- -GAUGCGCGAGU---UGCau--UGGGGCuaGU- -5' |
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24042 | 3' | -52.1 | NC_005262.1 | + | 21958 | 0.68 | 0.793721 |
Target: 5'- gCUGCGCGgUCGGCuucAGCgCCGAUCc -3' miRNA: 3'- -GAUGCGCgAGUUGca-UUGgGGCUAGu -5' |
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24042 | 3' | -52.1 | NC_005262.1 | + | 21438 | 0.67 | 0.865948 |
Target: 5'- gCUGCGCGCggccuUGgccGCCUCGAUCGc -3' miRNA: 3'- -GAUGCGCGaguu-GCau-UGGGGCUAGU- -5' |
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24042 | 3' | -52.1 | NC_005262.1 | + | 19701 | 0.68 | 0.822377 |
Target: 5'- -aGCGCGUcaUCGACaccACCCCGAUUc -3' miRNA: 3'- gaUGCGCG--AGUUGcauUGGGGCUAGu -5' |
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24042 | 3' | -52.1 | NC_005262.1 | + | 19447 | 0.67 | 0.849205 |
Target: 5'- ---aGCGCUgGGCGuUGGCCUCGAUg- -3' miRNA: 3'- gaugCGCGAgUUGC-AUUGGGGCUAgu -5' |
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24042 | 3' | -52.1 | NC_005262.1 | + | 16287 | 0.71 | 0.677819 |
Target: 5'- gCUGCGCGCcgcucgCGGCGUGcaaCCGAUCGa -3' miRNA: 3'- -GAUGCGCGa-----GUUGCAUuggGGCUAGU- -5' |
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24042 | 3' | -52.1 | NC_005262.1 | + | 15900 | 0.68 | 0.793721 |
Target: 5'- -cGCGUGCgcgCGACGUGGCgCCgCGAUg- -3' miRNA: 3'- gaUGCGCGa--GUUGCAUUG-GG-GCUAgu -5' |
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24042 | 3' | -52.1 | NC_005262.1 | + | 15715 | 0.72 | 0.589226 |
Target: 5'- gCUAUGCGCUCGACGUGGCg-CGcUCAu -3' miRNA: 3'- -GAUGCGCGAGUUGCAUUGggGCuAGU- -5' |
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24042 | 3' | -52.1 | NC_005262.1 | + | 15712 | 0.68 | 0.793721 |
Target: 5'- -gACGCGUUCAGCcgcGCCUCGAUg- -3' miRNA: 3'- gaUGCGCGAGUUGcauUGGGGCUAgu -5' |
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24042 | 3' | -52.1 | NC_005262.1 | + | 13173 | 0.66 | 0.895702 |
Target: 5'- cCUugGCGggaguUUCAACGguaaggcUAACCCUGGUCc -3' miRNA: 3'- -GAugCGC-----GAGUUGC-------AUUGGGGCUAGu -5' |
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24042 | 3' | -52.1 | NC_005262.1 | + | 13094 | 0.68 | 0.793721 |
Target: 5'- -gGCGCGCUCcugcGCGUAcACCCaCG-UCAc -3' miRNA: 3'- gaUGCGCGAGu---UGCAU-UGGG-GCuAGU- -5' |
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24042 | 3' | -52.1 | NC_005262.1 | + | 12658 | 0.66 | 0.903363 |
Target: 5'- -cGCGCGCggcgcgCGGCG-AACCCUGcgCc -3' miRNA: 3'- gaUGCGCGa-----GUUGCaUUGGGGCuaGu -5' |
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24042 | 3' | -52.1 | NC_005262.1 | + | 10509 | 0.67 | 0.857697 |
Target: 5'- -cAUGCGgUCAGCGacGAUCUCGGUCGu -3' miRNA: 3'- gaUGCGCgAGUUGCa-UUGGGGCUAGU- -5' |
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24042 | 3' | -52.1 | NC_005262.1 | + | 10017 | 0.67 | 0.873952 |
Target: 5'- -aGCGCGCUgcgcuuugcgcCggUGUGAgCUCGAUCGu -3' miRNA: 3'- gaUGCGCGA-----------GuuGCAUUgGGGCUAGU- -5' |
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24042 | 3' | -52.1 | NC_005262.1 | + | 9386 | 0.66 | 0.896412 |
Target: 5'- gUugGCGacagccucccCUCAACGaguaUGGCCCCGGUaCAc -3' miRNA: 3'- gAugCGC----------GAGUUGC----AUUGGGGCUA-GU- -5' |
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24042 | 3' | -52.1 | NC_005262.1 | + | 7547 | 0.68 | 0.803459 |
Target: 5'- -gGCGCGCUCGACGacauccuUCCCGugcagcGUCAc -3' miRNA: 3'- gaUGCGCGAGUUGCauu----GGGGC------UAGU- -5' |
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24042 | 3' | -52.1 | NC_005262.1 | + | 5930 | 0.69 | 0.783811 |
Target: 5'- -aGCGUGCa-GAUG-AACCCCGAUCu -3' miRNA: 3'- gaUGCGCGagUUGCaUUGGGGCUAGu -5' |
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24042 | 3' | -52.1 | NC_005262.1 | + | 3116 | 0.66 | 0.896412 |
Target: 5'- -gGCGCcgGCUCAACGgcuuCCgCCgGAUCAu -3' miRNA: 3'- gaUGCG--CGAGUUGCauu-GG-GG-CUAGU- -5' |
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24042 | 3' | -52.1 | NC_005262.1 | + | 1709 | 0.66 | 0.910039 |
Target: 5'- cCUACGCgauuaucgaucuGCUCAACGacuaUGACCCgGAc-- -3' miRNA: 3'- -GAUGCG------------CGAGUUGC----AUUGGGgCUagu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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