miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24042 3' -52.1 NC_005262.1 + 48794 0.66 0.881701
Target:  5'- gUGCGCgaGCUCAcgagcCGU-AUCCCGGUCGu -3'
miRNA:   3'- gAUGCG--CGAGUu----GCAuUGGGGCUAGU- -5'
24042 3' -52.1 NC_005262.1 + 40675 0.67 0.840482
Target:  5'- -cACGCGCaUAGCGUcuacGACCCUGGaCAc -3'
miRNA:   3'- gaUGCGCGaGUUGCA----UUGGGGCUaGU- -5'
24042 3' -52.1 NC_005262.1 + 57505 0.67 0.848343
Target:  5'- -gGCGCcgaaGUUCAGCGUcgcgccgggcaucGACCgCGAUCAg -3'
miRNA:   3'- gaUGCG----CGAGUUGCA-------------UUGGgGCUAGU- -5'
24042 3' -52.1 NC_005262.1 + 19447 0.67 0.849205
Target:  5'- ---aGCGCUgGGCGuUGGCCUCGAUg- -3'
miRNA:   3'- gaugCGCGAgUUGC-AUUGGGGCUAgu -5'
24042 3' -52.1 NC_005262.1 + 33334 0.67 0.857697
Target:  5'- aCUGCGuCGCUgcGCGgcaccguGCCgCCGAUCGa -3'
miRNA:   3'- -GAUGC-GCGAguUGCau-----UGG-GGCUAGU- -5'
24042 3' -52.1 NC_005262.1 + 63723 0.67 0.857697
Target:  5'- gCUACGUGCgUGACGUGuGCCUCGAg-- -3'
miRNA:   3'- -GAUGCGCGaGUUGCAU-UGGGGCUagu -5'
24042 3' -52.1 NC_005262.1 + 55352 0.67 0.865948
Target:  5'- --cCGCGCUCGACGaGACggacaagagcgaCCgGAUCAc -3'
miRNA:   3'- gauGCGCGAGUUGCaUUG------------GGgCUAGU- -5'
24042 3' -52.1 NC_005262.1 + 43713 0.67 0.87078
Target:  5'- -gACGCGCUCAccgacaagaagguCGaAACCgCGAUCGu -3'
miRNA:   3'- gaUGCGCGAGUu------------GCaUUGGgGCUAGU- -5'
24042 3' -52.1 NC_005262.1 + 60840 0.67 0.873952
Target:  5'- cCUACGCGaUCGGCGUGGCgauggCCGAggCAa -3'
miRNA:   3'- -GAUGCGCgAGUUGCAUUGg----GGCUa-GU- -5'
24042 3' -52.1 NC_005262.1 + 19701 0.68 0.822377
Target:  5'- -aGCGCGUcaUCGACaccACCCCGAUUc -3'
miRNA:   3'- gaUGCGCG--AGUUGcauUGGGGCUAGu -5'
24042 3' -52.1 NC_005262.1 + 7547 0.68 0.803459
Target:  5'- -gGCGCGCUCGACGacauccuUCCCGugcagcGUCAc -3'
miRNA:   3'- gaUGCGCGAGUUGCauu----GGGGC------UAGU- -5'
24042 3' -52.1 NC_005262.1 + 15900 0.68 0.793721
Target:  5'- -cGCGUGCgcgCGACGUGGCgCCgCGAUg- -3'
miRNA:   3'- gaUGCGCGa--GUUGCAUUG-GG-GCUAgu -5'
24042 3' -52.1 NC_005262.1 + 54335 0.75 0.441858
Target:  5'- -gACGCGCUCGGC---ACCUCGAUCu -3'
miRNA:   3'- gaUGCGCGAGUUGcauUGGGGCUAGu -5'
24042 3' -52.1 NC_005262.1 + 43420 0.74 0.502862
Target:  5'- -cGCgGCGCUCAACGUcuaUCCGAUCGa -3'
miRNA:   3'- gaUG-CGCGAGUUGCAuugGGGCUAGU- -5'
24042 3' -52.1 NC_005262.1 + 15715 0.72 0.589226
Target:  5'- gCUAUGCGCUCGACGUGGCg-CGcUCAu -3'
miRNA:   3'- -GAUGCGCGAGUUGCAUUGggGCuAGU- -5'
24042 3' -52.1 NC_005262.1 + 22923 0.72 0.600271
Target:  5'- gCUACGCGCUCGccgACGccauGCUCCGcgCGg -3'
miRNA:   3'- -GAUGCGCGAGU---UGCau--UGGGGCuaGU- -5'
24042 3' -52.1 NC_005262.1 + 36284 0.71 0.644635
Target:  5'- -gGCGCGCggCGACGcgaacACCUCGGUCGa -3'
miRNA:   3'- gaUGCGCGa-GUUGCau---UGGGGCUAGU- -5'
24042 3' -52.1 NC_005262.1 + 34006 0.71 0.666787
Target:  5'- -gGCGCGgaCGGCGUGACgCCGGgccgCAu -3'
miRNA:   3'- gaUGCGCgaGUUGCAUUGgGGCUa---GU- -5'
24042 3' -52.1 NC_005262.1 + 16287 0.71 0.677819
Target:  5'- gCUGCGCGCcgcucgCGGCGUGcaaCCGAUCGa -3'
miRNA:   3'- -GAUGCGCGa-----GUUGCAUuggGGCUAGU- -5'
24042 3' -52.1 NC_005262.1 + 55645 0.7 0.688807
Target:  5'- -cGCGCGCUCGuggccGCGUccGGCaCgCCGGUCAc -3'
miRNA:   3'- gaUGCGCGAGU-----UGCA--UUG-G-GGCUAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.