miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24042 3' -52.1 NC_005262.1 + 36284 0.71 0.644635
Target:  5'- -gGCGCGCggCGACGcgaacACCUCGGUCGa -3'
miRNA:   3'- gaUGCGCGa-GUUGCau---UGGGGCUAGU- -5'
24042 3' -52.1 NC_005262.1 + 34006 0.71 0.666787
Target:  5'- -gGCGCGgaCGGCGUGACgCCGGgccgCAu -3'
miRNA:   3'- gaUGCGCgaGUUGCAUUGgGGCUa---GU- -5'
24042 3' -52.1 NC_005262.1 + 16287 0.71 0.677819
Target:  5'- gCUGCGCGCcgcucgCGGCGUGcaaCCGAUCGa -3'
miRNA:   3'- -GAUGCGCGa-----GUUGCAUuggGGCUAGU- -5'
24042 3' -52.1 NC_005262.1 + 55645 0.7 0.688807
Target:  5'- -cGCGCGCUCGuggccGCGUccGGCaCgCCGGUCAc -3'
miRNA:   3'- gaUGCGCGAGU-----UGCA--UUG-G-GGCUAGU- -5'
24042 3' -52.1 NC_005262.1 + 15900 0.68 0.793721
Target:  5'- -cGCGUGCgcgCGACGUGGCgCCgCGAUg- -3'
miRNA:   3'- gaUGCGCGa--GUUGCAUUG-GG-GCUAgu -5'
24042 3' -52.1 NC_005262.1 + 7547 0.68 0.803459
Target:  5'- -gGCGCGCUCGACGacauccuUCCCGugcagcGUCAc -3'
miRNA:   3'- gaUGCGCGAGUUGCauu----GGGGC------UAGU- -5'
24042 3' -52.1 NC_005262.1 + 19701 0.68 0.822377
Target:  5'- -aGCGCGUcaUCGACaccACCCCGAUUc -3'
miRNA:   3'- gaUGCGCG--AGUUGcauUGGGGCUAGu -5'
24042 3' -52.1 NC_005262.1 + 27455 0.67 0.873952
Target:  5'- -gAgGCGC-CGACGacGGCCUCGGUCGg -3'
miRNA:   3'- gaUgCGCGaGUUGCa-UUGGGGCUAGU- -5'
24042 3' -52.1 NC_005262.1 + 23437 0.67 0.865948
Target:  5'- -cGCGCGCUUcACGccGGCCgUGGUCGa -3'
miRNA:   3'- gaUGCGCGAGuUGCa-UUGGgGCUAGU- -5'
24042 3' -52.1 NC_005262.1 + 39248 0.67 0.865948
Target:  5'- -aGCGCGCuUCAGCG-AACCgCUGA-CAg -3'
miRNA:   3'- gaUGCGCG-AGUUGCaUUGG-GGCUaGU- -5'
24042 3' -52.1 NC_005262.1 + 21438 0.67 0.865948
Target:  5'- gCUGCGCGCggccuUGgccGCCUCGAUCGc -3'
miRNA:   3'- -GAUGCGCGaguu-GCau-UGGGGCUAGU- -5'
24042 3' -52.1 NC_005262.1 + 51242 0.67 0.865948
Target:  5'- gCUGCGCGCUCGGCG--ACUUCu-UCAc -3'
miRNA:   3'- -GAUGCGCGAGUUGCauUGGGGcuAGU- -5'
24042 3' -52.1 NC_005262.1 + 10017 0.67 0.873952
Target:  5'- -aGCGCGCUgcgcuuugcgcCggUGUGAgCUCGAUCGu -3'
miRNA:   3'- gaUGCGCGA-----------GuuGCAUUgGGGCUAGU- -5'
24042 3' -52.1 NC_005262.1 + 33328 0.66 0.88919
Target:  5'- ---aGCGCUCGACGUGcGCgUCGAUg- -3'
miRNA:   3'- gaugCGCGAGUUGCAU-UGgGGCUAgu -5'
24042 3' -52.1 NC_005262.1 + 55475 0.66 0.88919
Target:  5'- aUGCgGCGCUCGaucugcuugcGCGUGA-UCCGGUCGc -3'
miRNA:   3'- gAUG-CGCGAGU----------UGCAUUgGGGCUAGU- -5'
24042 3' -52.1 NC_005262.1 + 54815 0.66 0.896412
Target:  5'- cCUGauCGCggAACGUGACCuuGAUCu -3'
miRNA:   3'- -GAUgcGCGagUUGCAUUGGggCUAGu -5'
24042 3' -52.1 NC_005262.1 + 3116 0.66 0.896412
Target:  5'- -gGCGCcgGCUCAACGgcuuCCgCCgGAUCAu -3'
miRNA:   3'- gaUGCG--CGAGUUGCauu-GG-GG-CUAGU- -5'
24042 3' -52.1 NC_005262.1 + 33691 0.66 0.896412
Target:  5'- cCUGCGaCGUcggggCGACugcgGUGGCCUCGAUCGu -3'
miRNA:   3'- -GAUGC-GCGa----GUUG----CAUUGGGGCUAGU- -5'
24042 3' -52.1 NC_005262.1 + 1709 0.66 0.910039
Target:  5'- cCUACGCgauuaucgaucuGCUCAACGacuaUGACCCgGAc-- -3'
miRNA:   3'- -GAUGCG------------CGAGUUGC----AUUGGGgCUagu -5'
24042 3' -52.1 NC_005262.1 + 37579 0.76 0.385267
Target:  5'- gUAUGCGCUCuGCGaAACCuuGAUCGc -3'
miRNA:   3'- gAUGCGCGAGuUGCaUUGGggCUAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.