miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24042 3' -52.1 NC_005262.1 + 58943 0.66 0.916438
Target:  5'- --cUGCGC-CGGCGUGACgucgCCGAUCu -3'
miRNA:   3'- gauGCGCGaGUUGCAUUGg---GGCUAGu -5'
24042 3' -52.1 NC_005262.1 + 51655 0.67 0.846612
Target:  5'- -gGCGCGCUCAagcuccgcGCGcGACCacgugguacgcgagCCGGUCGc -3'
miRNA:   3'- gaUGCGCGAGU--------UGCaUUGG--------------GGCUAGU- -5'
24042 3' -52.1 NC_005262.1 + 49619 0.67 0.840482
Target:  5'- -aGCGCGCUCuGCGgcagcuCCUCGAgCAg -3'
miRNA:   3'- gaUGCGCGAGuUGCauu---GGGGCUaGU- -5'
24042 3' -52.1 NC_005262.1 + 37579 0.76 0.385267
Target:  5'- gUAUGCGCUCuGCGaAACCuuGAUCGc -3'
miRNA:   3'- gAUGCGCGAGuUGCaUUGGggCUAGU- -5'
24042 3' -52.1 NC_005262.1 + 54815 0.66 0.896412
Target:  5'- cCUGauCGCggAACGUGACCuuGAUCu -3'
miRNA:   3'- -GAUgcGCGagUUGCAUUGGggCUAGu -5'
24042 3' -52.1 NC_005262.1 + 55475 0.66 0.88919
Target:  5'- aUGCgGCGCUCGaucugcuugcGCGUGA-UCCGGUCGc -3'
miRNA:   3'- gAUG-CGCGAGU----------UGCAUUgGGGCUAGU- -5'
24042 3' -52.1 NC_005262.1 + 10017 0.67 0.873952
Target:  5'- -aGCGCGCUgcgcuuugcgcCggUGUGAgCUCGAUCGu -3'
miRNA:   3'- gaUGCGCGA-----------GuuGCAUUgGGGCUAGU- -5'
24042 3' -52.1 NC_005262.1 + 27455 0.67 0.873952
Target:  5'- -gAgGCGC-CGACGacGGCCUCGGUCGg -3'
miRNA:   3'- gaUgCGCGaGUUGCa-UUGGGGCUAGU- -5'
24042 3' -52.1 NC_005262.1 + 21438 0.67 0.865948
Target:  5'- gCUGCGCGCggccuUGgccGCCUCGAUCGc -3'
miRNA:   3'- -GAUGCGCGaguu-GCau-UGGGGCUAGU- -5'
24042 3' -52.1 NC_005262.1 + 59227 0.67 0.849205
Target:  5'- aUGCGCGCggCGACGcGGCCCggcCGGUUc -3'
miRNA:   3'- gAUGCGCGa-GUUGCaUUGGG---GCUAGu -5'
24042 3' -52.1 NC_005262.1 + 25984 0.67 0.857697
Target:  5'- aUGCGCGCugcucggcaUCGAuCGUGugccgugcuucGCCUCGAUCGu -3'
miRNA:   3'- gAUGCGCG---------AGUU-GCAU-----------UGGGGCUAGU- -5'
24042 3' -52.1 NC_005262.1 + 39248 0.67 0.865948
Target:  5'- -aGCGCGCuUCAGCG-AACCgCUGA-CAg -3'
miRNA:   3'- gaUGCGCG-AGUUGCaUUGG-GGCUaGU- -5'
24042 3' -52.1 NC_005262.1 + 1709 0.66 0.910039
Target:  5'- cCUACGCgauuaucgaucuGCUCAACGacuaUGACCCgGAc-- -3'
miRNA:   3'- -GAUGCG------------CGAGUUGC----AUUGGGgCUagu -5'
24042 3' -52.1 NC_005262.1 + 57754 0.67 0.857697
Target:  5'- -gGCGCGCgagaagUCGAuCGU-GCCgCCGAUCGa -3'
miRNA:   3'- gaUGCGCG------AGUU-GCAuUGG-GGCUAGU- -5'
24042 3' -52.1 NC_005262.1 + 33691 0.66 0.896412
Target:  5'- cCUGCGaCGUcggggCGACugcgGUGGCCUCGAUCGu -3'
miRNA:   3'- -GAUGC-GCGa----GUUG----CAUUGGGGCUAGU- -5'
24042 3' -52.1 NC_005262.1 + 23437 0.67 0.865948
Target:  5'- -cGCGCGCUUcACGccGGCCgUGGUCGa -3'
miRNA:   3'- gaUGCGCGAGuUGCa-UUGGgGCUAGU- -5'
24042 3' -52.1 NC_005262.1 + 10509 0.67 0.857697
Target:  5'- -cAUGCGgUCAGCGacGAUCUCGGUCGu -3'
miRNA:   3'- gaUGCGCgAGUUGCa-UUGGGGCUAGU- -5'
24042 3' -52.1 NC_005262.1 + 28646 0.67 0.840482
Target:  5'- -cGCGCGCgCGGCGgaaGCCCCaGAUa- -3'
miRNA:   3'- gaUGCGCGaGUUGCau-UGGGG-CUAgu -5'
24042 3' -52.1 NC_005262.1 + 3116 0.66 0.896412
Target:  5'- -gGCGCcgGCUCAACGgcuuCCgCCgGAUCAu -3'
miRNA:   3'- gaUGCG--CGAGUUGCauu-GG-GG-CUAGU- -5'
24042 3' -52.1 NC_005262.1 + 33328 0.66 0.88919
Target:  5'- ---aGCGCUCGACGUGcGCgUCGAUg- -3'
miRNA:   3'- gaugCGCGAGUUGCAU-UGgGGCUAgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.