miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24042 3' -52.1 NC_005262.1 + 15712 0.68 0.793721
Target:  5'- -gACGCGUUCAGCcgcGCCUCGAUg- -3'
miRNA:   3'- gaUGCGCGAGUUGcauUGGGGCUAgu -5'
24042 3' -52.1 NC_005262.1 + 45157 0.68 0.831536
Target:  5'- cCUGCGCGC---GCGUGauGCCCUGGaaUCGg -3'
miRNA:   3'- -GAUGCGCGaguUGCAU--UGGGGCU--AGU- -5'
24042 3' -52.1 NC_005262.1 + 51655 0.67 0.846612
Target:  5'- -gGCGCGCUCAagcuccgcGCGcGACCacgugguacgcgagCCGGUCGc -3'
miRNA:   3'- gaUGCGCGAGU--------UGCaUUGG--------------GGCUAGU- -5'
24042 3' -52.1 NC_005262.1 + 49555 0.72 0.578217
Target:  5'- aUGCGCGCuUCAGCGUgcucuugcuGACCUucuCGGUCAc -3'
miRNA:   3'- gAUGCGCG-AGUUGCA---------UUGGG---GCUAGU- -5'
24042 3' -52.1 NC_005262.1 + 21958 0.68 0.793721
Target:  5'- gCUGCGCGgUCGGCuucAGCgCCGAUCc -3'
miRNA:   3'- -GAUGCGCgAGUUGca-UUGgGGCUAGu -5'
24042 3' -52.1 NC_005262.1 + 59227 0.67 0.849205
Target:  5'- aUGCGCGCggCGACGcGGCCCggcCGGUUc -3'
miRNA:   3'- gAUGCGCGa-GUUGCaUUGGG---GCUAGu -5'
24042 3' -52.1 NC_005262.1 + 1516 0.71 0.666787
Target:  5'- -cGCuGCGCUCGACGaagcGGCCgCGGUCGu -3'
miRNA:   3'- gaUG-CGCGAGUUGCa---UUGGgGCUAGU- -5'
24042 3' -52.1 NC_005262.1 + 10509 0.67 0.857697
Target:  5'- -cAUGCGgUCAGCGacGAUCUCGGUCGu -3'
miRNA:   3'- gaUGCGCgAGUUGCa-UUGGGGCUAGU- -5'
24042 3' -52.1 NC_005262.1 + 35246 0.69 0.753166
Target:  5'- uUGC-CGC-CAGCGUcGCCCgGAUCGg -3'
miRNA:   3'- gAUGcGCGaGUUGCAuUGGGgCUAGU- -5'
24042 3' -52.1 NC_005262.1 + 41653 0.74 0.492426
Target:  5'- gUACGUGUugUgGGCGUGGCCCgGAUCGu -3'
miRNA:   3'- gAUGCGCG--AgUUGCAUUGGGgCUAGU- -5'
24042 3' -52.1 NC_005262.1 + 57754 0.67 0.857697
Target:  5'- -gGCGCGCgagaagUCGAuCGU-GCCgCCGAUCGa -3'
miRNA:   3'- gaUGCGCG------AGUU-GCAuUGG-GGCUAGU- -5'
24042 3' -52.1 NC_005262.1 + 46019 0.68 0.822377
Target:  5'- --cCGUcCUCGACGUAGCCCgacuUGAUCGg -3'
miRNA:   3'- gauGCGcGAGUUGCAUUGGG----GCUAGU- -5'
24042 3' -52.1 NC_005262.1 + 49619 0.67 0.840482
Target:  5'- -aGCGCGCUCuGCGgcagcuCCUCGAgCAg -3'
miRNA:   3'- gaUGCGCGAGuUGCauu---GGGGCUaGU- -5'
24042 3' -52.1 NC_005262.1 + 28646 0.67 0.840482
Target:  5'- -cGCGCGCgCGGCGgaaGCCCCaGAUa- -3'
miRNA:   3'- gaUGCGCGaGUUGCau-UGGGG-CUAgu -5'
24042 3' -52.1 NC_005262.1 + 19447 0.67 0.849205
Target:  5'- ---aGCGCUgGGCGuUGGCCUCGAUg- -3'
miRNA:   3'- gaugCGCGAgUUGC-AUUGGGGCUAgu -5'
24042 3' -52.1 NC_005262.1 + 34582 0.66 0.896412
Target:  5'- gUGCGCGCcguGCGgcGCCgUGAUCc -3'
miRNA:   3'- gAUGCGCGaguUGCauUGGgGCUAGu -5'
24042 3' -52.1 NC_005262.1 + 34006 0.71 0.666787
Target:  5'- -gGCGCGgaCGGCGUGACgCCGGgccgCAu -3'
miRNA:   3'- gaUGCGCgaGUUGCAUUGgGGCUa---GU- -5'
24042 3' -52.1 NC_005262.1 + 12658 0.66 0.903363
Target:  5'- -cGCGCGCggcgcgCGGCG-AACCCUGcgCc -3'
miRNA:   3'- gaUGCGCGa-----GUUGCaUUGGGGCuaGu -5'
24042 3' -52.1 NC_005262.1 + 37346 0.66 0.910039
Target:  5'- --uCGCGCuUCGACGUGcACuUCUGGUCAu -3'
miRNA:   3'- gauGCGCG-AGUUGCAU-UG-GGGCUAGU- -5'
24042 3' -52.1 NC_005262.1 + 57505 0.67 0.848343
Target:  5'- -gGCGCcgaaGUUCAGCGUcgcgccgggcaucGACCgCGAUCAg -3'
miRNA:   3'- gaUGCG----CGAGUUGCA-------------UUGGgGCUAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.