Results 1 - 20 of 183 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24043 | 3' | -59.4 | NC_005262.1 | + | 36946 | 1.09 | 0.000483 |
Target: 5'- uGCCGAGAUCACCACGCUCGCGCCGCUg -3' miRNA: 3'- -CGGCUCUAGUGGUGCGAGCGCGGCGA- -5' |
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24043 | 3' | -59.4 | NC_005262.1 | + | 3834 | 0.8 | 0.069287 |
Target: 5'- uGCCGAGcgCcCCGCGCgugaCGUGCCGCUg -3' miRNA: 3'- -CGGCUCuaGuGGUGCGa---GCGCGGCGA- -5' |
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24043 | 3' | -59.4 | NC_005262.1 | + | 22198 | 0.8 | 0.073233 |
Target: 5'- aGCCGAGAaCGCCGgGCUCGCGCuCGaCa -3' miRNA: 3'- -CGGCUCUaGUGGUgCGAGCGCG-GC-Ga -5' |
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24043 | 3' | -59.4 | NC_005262.1 | + | 38436 | 0.8 | 0.073233 |
Target: 5'- gGUCGAGAUCACgccggacgacggCACGCUCGuCGCCGUa -3' miRNA: 3'- -CGGCUCUAGUG------------GUGCGAGC-GCGGCGa -5' |
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24043 | 3' | -59.4 | NC_005262.1 | + | 49273 | 0.8 | 0.063751 |
Target: 5'- uGCCgGAGAUCAUCGcCGUgCGCGCCGCUg -3' miRNA: 3'- -CGG-CUCUAGUGGU-GCGaGCGCGGCGA- -5' |
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24043 | 3' | -59.4 | NC_005262.1 | + | 61626 | 0.77 | 0.119774 |
Target: 5'- cGCCGAGAUCGCCuuGCUguaGCGCUGg- -3' miRNA: 3'- -CGGCUCUAGUGGugCGAg--CGCGGCga -5' |
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24043 | 3' | -59.4 | NC_005262.1 | + | 5166 | 0.77 | 0.116587 |
Target: 5'- cGCCGAGccgGUCGCaCGCGC-CGcCGCCGCg -3' miRNA: 3'- -CGGCUC---UAGUG-GUGCGaGC-GCGGCGa -5' |
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24043 | 3' | -59.4 | NC_005262.1 | + | 60963 | 0.76 | 0.129827 |
Target: 5'- gGCCGAcuUCAUCGCGCUUuCGCCGCg -3' miRNA: 3'- -CGGCUcuAGUGGUGCGAGcGCGGCGa -5' |
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24043 | 3' | -59.4 | NC_005262.1 | + | 13044 | 0.76 | 0.131225 |
Target: 5'- cGCCGAGccggucggcgaugccGUCGCgCACGCccuucagCGCGCCGCg -3' miRNA: 3'- -CGGCUC---------------UAGUG-GUGCGa------GCGCGGCGa -5' |
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24043 | 3' | -59.4 | NC_005262.1 | + | 45123 | 0.76 | 0.129827 |
Target: 5'- cGCCGGguuGAUCcCCAUGCUCGCcaucuGCCGCg -3' miRNA: 3'- -CGGCU---CUAGuGGUGCGAGCG-----CGGCGa -5' |
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24043 | 3' | -59.4 | NC_005262.1 | + | 59 | 0.76 | 0.133348 |
Target: 5'- uGCCGGGGagGCCGCgGCUCGCgaagaagucgGCCGCg -3' miRNA: 3'- -CGGCUCUagUGGUG-CGAGCG----------CGGCGa -5' |
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24043 | 3' | -59.4 | NC_005262.1 | + | 50794 | 0.76 | 0.136957 |
Target: 5'- aGCCGaAGGUCGCCgagggcauggaGCGCuUCGCGCCGg- -3' miRNA: 3'- -CGGC-UCUAGUGG-----------UGCG-AGCGCGGCga -5' |
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24043 | 3' | -59.4 | NC_005262.1 | + | 35334 | 0.75 | 0.164822 |
Target: 5'- cGCCGGGggCGCCcagcCGCugccgaUCGCGCCGCc -3' miRNA: 3'- -CGGCUCuaGUGGu---GCG------AGCGCGGCGa -5' |
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24043 | 3' | -59.4 | NC_005262.1 | + | 21859 | 0.75 | 0.16055 |
Target: 5'- uGCCGAGAU-GCUugGCgacguugacgCGUGCCGCUg -3' miRNA: 3'- -CGGCUCUAgUGGugCGa---------GCGCGGCGA- -5' |
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24043 | 3' | -59.4 | NC_005262.1 | + | 50249 | 0.75 | 0.159288 |
Target: 5'- gGCCGAGAUCgACCgccgcaacgagggcGCGCcCGCGCCGg- -3' miRNA: 3'- -CGGCUCUAG-UGG--------------UGCGaGCGCGGCga -5' |
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24043 | 3' | -59.4 | NC_005262.1 | + | 10984 | 0.74 | 0.192656 |
Target: 5'- cGCCGGGAaCGCCggucGCGCUCGCaCgGCUg -3' miRNA: 3'- -CGGCUCUaGUGG----UGCGAGCGcGgCGA- -5' |
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24043 | 3' | -59.4 | NC_005262.1 | + | 50486 | 0.74 | 0.173674 |
Target: 5'- cGCgGcgcuGAUCGCCGCGCgguUCGCGUCGCc -3' miRNA: 3'- -CGgCu---CUAGUGGUGCG---AGCGCGGCGa -5' |
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24043 | 3' | -59.4 | NC_005262.1 | + | 43940 | 0.74 | 0.192656 |
Target: 5'- cGCCGAGGUCcugccgGCCAcCGCcgCGCGCgGCc -3' miRNA: 3'- -CGGCUCUAG------UGGU-GCGa-GCGCGgCGa -5' |
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24043 | 3' | -59.4 | NC_005262.1 | + | 25906 | 0.74 | 0.18012 |
Target: 5'- uGCCGAGcagcgcgcaugguacGUCGCCACGCgCGaCGCCGaCUu -3' miRNA: 3'- -CGGCUC---------------UAGUGGUGCGaGC-GCGGC-GA- -5' |
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24043 | 3' | -59.4 | NC_005262.1 | + | 52531 | 0.74 | 0.182948 |
Target: 5'- gGCCGAGGagAUCGCGCUgGCGCagGCg -3' miRNA: 3'- -CGGCUCUagUGGUGCGAgCGCGg-CGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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