miRNA display CGI


Results 1 - 20 of 183 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24043 3' -59.4 NC_005262.1 + 36946 1.09 0.000483
Target:  5'- uGCCGAGAUCACCACGCUCGCGCCGCUg -3'
miRNA:   3'- -CGGCUCUAGUGGUGCGAGCGCGGCGA- -5'
24043 3' -59.4 NC_005262.1 + 49273 0.8 0.063751
Target:  5'- uGCCgGAGAUCAUCGcCGUgCGCGCCGCUg -3'
miRNA:   3'- -CGG-CUCUAGUGGU-GCGaGCGCGGCGA- -5'
24043 3' -59.4 NC_005262.1 + 3834 0.8 0.069287
Target:  5'- uGCCGAGcgCcCCGCGCgugaCGUGCCGCUg -3'
miRNA:   3'- -CGGCUCuaGuGGUGCGa---GCGCGGCGA- -5'
24043 3' -59.4 NC_005262.1 + 22198 0.8 0.073233
Target:  5'- aGCCGAGAaCGCCGgGCUCGCGCuCGaCa -3'
miRNA:   3'- -CGGCUCUaGUGGUgCGAGCGCG-GC-Ga -5'
24043 3' -59.4 NC_005262.1 + 38436 0.8 0.073233
Target:  5'- gGUCGAGAUCACgccggacgacggCACGCUCGuCGCCGUa -3'
miRNA:   3'- -CGGCUCUAGUG------------GUGCGAGC-GCGGCGa -5'
24043 3' -59.4 NC_005262.1 + 5166 0.77 0.116587
Target:  5'- cGCCGAGccgGUCGCaCGCGC-CGcCGCCGCg -3'
miRNA:   3'- -CGGCUC---UAGUG-GUGCGaGC-GCGGCGa -5'
24043 3' -59.4 NC_005262.1 + 61626 0.77 0.119774
Target:  5'- cGCCGAGAUCGCCuuGCUguaGCGCUGg- -3'
miRNA:   3'- -CGGCUCUAGUGGugCGAg--CGCGGCga -5'
24043 3' -59.4 NC_005262.1 + 60963 0.76 0.129827
Target:  5'- gGCCGAcuUCAUCGCGCUUuCGCCGCg -3'
miRNA:   3'- -CGGCUcuAGUGGUGCGAGcGCGGCGa -5'
24043 3' -59.4 NC_005262.1 + 45123 0.76 0.129827
Target:  5'- cGCCGGguuGAUCcCCAUGCUCGCcaucuGCCGCg -3'
miRNA:   3'- -CGGCU---CUAGuGGUGCGAGCG-----CGGCGa -5'
24043 3' -59.4 NC_005262.1 + 13044 0.76 0.131225
Target:  5'- cGCCGAGccggucggcgaugccGUCGCgCACGCccuucagCGCGCCGCg -3'
miRNA:   3'- -CGGCUC---------------UAGUG-GUGCGa------GCGCGGCGa -5'
24043 3' -59.4 NC_005262.1 + 59 0.76 0.133348
Target:  5'- uGCCGGGGagGCCGCgGCUCGCgaagaagucgGCCGCg -3'
miRNA:   3'- -CGGCUCUagUGGUG-CGAGCG----------CGGCGa -5'
24043 3' -59.4 NC_005262.1 + 50794 0.76 0.136957
Target:  5'- aGCCGaAGGUCGCCgagggcauggaGCGCuUCGCGCCGg- -3'
miRNA:   3'- -CGGC-UCUAGUGG-----------UGCG-AGCGCGGCga -5'
24043 3' -59.4 NC_005262.1 + 50249 0.75 0.159288
Target:  5'- gGCCGAGAUCgACCgccgcaacgagggcGCGCcCGCGCCGg- -3'
miRNA:   3'- -CGGCUCUAG-UGG--------------UGCGaGCGCGGCga -5'
24043 3' -59.4 NC_005262.1 + 21859 0.75 0.16055
Target:  5'- uGCCGAGAU-GCUugGCgacguugacgCGUGCCGCUg -3'
miRNA:   3'- -CGGCUCUAgUGGugCGa---------GCGCGGCGA- -5'
24043 3' -59.4 NC_005262.1 + 35334 0.75 0.164822
Target:  5'- cGCCGGGggCGCCcagcCGCugccgaUCGCGCCGCc -3'
miRNA:   3'- -CGGCUCuaGUGGu---GCG------AGCGCGGCGa -5'
24043 3' -59.4 NC_005262.1 + 50486 0.74 0.173674
Target:  5'- cGCgGcgcuGAUCGCCGCGCgguUCGCGUCGCc -3'
miRNA:   3'- -CGgCu---CUAGUGGUGCG---AGCGCGGCGa -5'
24043 3' -59.4 NC_005262.1 + 25906 0.74 0.18012
Target:  5'- uGCCGAGcagcgcgcaugguacGUCGCCACGCgCGaCGCCGaCUu -3'
miRNA:   3'- -CGGCUC---------------UAGUGGUGCGaGC-GCGGC-GA- -5'
24043 3' -59.4 NC_005262.1 + 52531 0.74 0.182948
Target:  5'- gGCCGAGGagAUCGCGCUgGCGCagGCg -3'
miRNA:   3'- -CGGCUCUagUGGUGCGAgCGCGg-CGa -5'
24043 3' -59.4 NC_005262.1 + 43940 0.74 0.192656
Target:  5'- cGCCGAGGUCcugccgGCCAcCGCcgCGCGCgGCc -3'
miRNA:   3'- -CGGCUCUAG------UGGU-GCGa-GCGCGgCGa -5'
24043 3' -59.4 NC_005262.1 + 10984 0.74 0.192656
Target:  5'- cGCCGGGAaCGCCggucGCGCUCGCaCgGCUg -3'
miRNA:   3'- -CGGCUCUaGUGG----UGCGAGCGcGgCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.