miRNA display CGI


Results 21 - 40 of 183 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24043 3' -59.4 NC_005262.1 + 42375 0.73 0.208064
Target:  5'- cGCgCGAGAacacgUCGCCGgugcccgugcCGCUCGuCGCCGCa -3'
miRNA:   3'- -CG-GCUCU-----AGUGGU----------GCGAGC-GCGGCGa -5'
24043 3' -59.4 NC_005262.1 + 11406 0.73 0.208064
Target:  5'- cGCCGAagccgCGCCGCGC-CGgGCCGCc -3'
miRNA:   3'- -CGGCUcua--GUGGUGCGaGCgCGGCGa -5'
24043 3' -59.4 NC_005262.1 + 21333 0.73 0.208064
Target:  5'- cGCUcGGAUCGCCGCcUUCGUGCCGUUc -3'
miRNA:   3'- -CGGcUCUAGUGGUGcGAGCGCGGCGA- -5'
24043 3' -59.4 NC_005262.1 + 28259 0.73 0.208064
Target:  5'- uGUCGAcGGcCGCCGCGCgcagUUGCGCCGCg -3'
miRNA:   3'- -CGGCU-CUaGUGGUGCG----AGCGCGGCGa -5'
24043 3' -59.4 NC_005262.1 + 40129 0.73 0.213432
Target:  5'- cCCGAaagUACgACGCUCGCGCUGCa -3'
miRNA:   3'- cGGCUcuaGUGgUGCGAGCGCGGCGa -5'
24043 3' -59.4 NC_005262.1 + 15582 0.73 0.218364
Target:  5'- cGCCGGuGAgcgagcCGCCGCGCUCgguguaaGCGCCGUg -3'
miRNA:   3'- -CGGCU-CUa-----GUGGUGCGAG-------CGCGGCGa -5'
24043 3' -59.4 NC_005262.1 + 53235 0.73 0.224524
Target:  5'- uGCCGA--UCGCCGCGUcgaagaacUCGCGCgGCa -3'
miRNA:   3'- -CGGCUcuAGUGGUGCG--------AGCGCGgCGa -5'
24043 3' -59.4 NC_005262.1 + 17652 0.72 0.230252
Target:  5'- gGCaGAGAUCGCC-CGCcagCGCGCCGa- -3'
miRNA:   3'- -CGgCUCUAGUGGuGCGa--GCGCGGCga -5'
24043 3' -59.4 NC_005262.1 + 56917 0.72 0.242077
Target:  5'- cGgCGAGAUCaagGCCGCGCUCgagaaGCGCaCGCc -3'
miRNA:   3'- -CgGCUCUAG---UGGUGCGAG-----CGCG-GCGa -5'
24043 3' -59.4 NC_005262.1 + 10586 0.72 0.242077
Target:  5'- uGCUGcuGGcCGCCAUGCUgGCGCUGCUg -3'
miRNA:   3'- -CGGCu-CUaGUGGUGCGAgCGCGGCGA- -5'
24043 3' -59.4 NC_005262.1 + 10690 0.72 0.248177
Target:  5'- aGUCGuccauGUCAUCGaagcCGCUCGCGCCGCg -3'
miRNA:   3'- -CGGCuc---UAGUGGU----GCGAGCGCGGCGa -5'
24043 3' -59.4 NC_005262.1 + 62829 0.72 0.254404
Target:  5'- uGCCGAcGAUCgGCCACgGCUCGaCGCgGUa -3'
miRNA:   3'- -CGGCU-CUAG-UGGUG-CGAGC-GCGgCGa -5'
24043 3' -59.4 NC_005262.1 + 14154 0.71 0.264633
Target:  5'- cGCCGGGAUugucCGCCGCGC-CGaggagugcggcaaGCCGCUc -3'
miRNA:   3'- -CGGCUCUA----GUGGUGCGaGCg------------CGGCGA- -5'
24043 3' -59.4 NC_005262.1 + 22671 0.71 0.267242
Target:  5'- aGuuGAGcagCGCCGCGCaUGCGgCCGCUa -3'
miRNA:   3'- -CggCUCua-GUGGUGCGaGCGC-GGCGA- -5'
24043 3' -59.4 NC_005262.1 + 17409 0.71 0.267242
Target:  5'- uGCCGAGAcgcugggCGCCACGCUggacgaccUGCGCuCGUUc -3'
miRNA:   3'- -CGGCUCUa------GUGGUGCGA--------GCGCG-GCGA- -5'
24043 3' -59.4 NC_005262.1 + 12747 0.71 0.273854
Target:  5'- cGCaGGGuUCGCCGCGCgcCGCGCgCGCUu -3'
miRNA:   3'- -CGgCUCuAGUGGUGCGa-GCGCG-GCGA- -5'
24043 3' -59.4 NC_005262.1 + 20581 0.71 0.280598
Target:  5'- cCCGGcGAgCAgCGCGCggCGCGCCGCa -3'
miRNA:   3'- cGGCU-CUaGUgGUGCGa-GCGCGGCGa -5'
24043 3' -59.4 NC_005262.1 + 59375 0.71 0.287472
Target:  5'- cGCCGAGcUC-CagGCGCUCGCGCaGCa -3'
miRNA:   3'- -CGGCUCuAGuGg-UGCGAGCGCGgCGa -5'
24043 3' -59.4 NC_005262.1 + 12371 0.71 0.287472
Target:  5'- uGCCGAGAaaGCUcgGCUCGCcgGCCGCg -3'
miRNA:   3'- -CGGCUCUagUGGugCGAGCG--CGGCGa -5'
24043 3' -59.4 NC_005262.1 + 33659 0.71 0.287472
Target:  5'- -aCGAGcgCGCCuCGCUgGuCGCCGCg -3'
miRNA:   3'- cgGCUCuaGUGGuGCGAgC-GCGGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.